WormBase Tree Display for CDS: Y60A3A.18
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| Y60A3A.18 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y60A3A | |||
| Structure | Source_exons | 1 | 63 | |||
| 121 | 366 | |||||
| 439 | 609 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q9U1Y9 | ||
| UniProt | UniProtAcc | Q9U1Y9 | ||||
| UniProt_GCRP | UniProtAcc | Q9U1Y9 | ||||
| AlphaFold | entry | Q9U1Y9 | ||||
| NCBI_protein | GI_number | GI:6425369 | ||||
| TREEFAM | TREEFAM_ID | TF354233 | ||||
| Protein_id | CHROMOSOME_V | CAB60402 | 1 | |||
| DB_remark | SKR-4 protein; contains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain), PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR036296 (SKP1-like, dimerisation domain superfamily), IPR016072 (SKP1 component, dimerisation), IPR016897 (S-phase kinase-associated protein 1), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR016073 (SKP1 component, POZ domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00004810 | ||||
| Corresponding_transcript | Y60A3A.18.1 | |||||
| Corresponding_protein | CE24523 | |||||
| Corresponding_PCR_product (2) | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA | male_Nanopore_Roach_156497 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_1421 | ||||||
| young_adult_Nanopore_Roach_38250 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_85684 | ||||||
| young_adult_Nanopore_Roach_130377 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_1497 | ||||||
| L3_Nanopore_Roach_97378 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_102675 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_37504 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_1870 | ||||||
| adult_Nanopore_Roach_32429 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_1111 | ||||||
| male_Nanopore_Roach_2229 | ||||||
| L4_Nanopore_Roach_21377 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_31830 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_2651 | ||||||
| adult_Nanopore_Roach_107368 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_67556 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_149270 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG5777|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| yk1303g10.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_175110 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_43471 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_180448 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_41702 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00069084 | |||||
| WBRNAi00086783 | ||||||
| WBRNAi00057808 | ||||||
| WBRNAi00086782 | ||||||
| WBRNAi00086801 | ||||||
| WBRNAi00069085 | ||||||
| Microarray_results (15) | ||||||
| Brief_identification | Skp1-related protein | Accession_evidence | UniProt | TR:Q9U1Y9 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf023287 | |||||
| Method | curated |
