WormBase Tree Display for CDS: W01G7.5
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| W01G7.5 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_II | |||
| Structure | Source_exons | 1 | 141 | |||
| 198 | 1221 | |||||
| 2067 | 2404 | |||||
| DB_info | Database (6) | |||||
| Protein_id | CHROMOSOME_II | CAB03457 | 1 | |||
| DB_remark | LEM-2 protein; contains similarity to Pfam domain PF03020 (LEM domain); contains similarity to Interpro domains IPR003887 (LEM domain), IPR011015 (LEM/LEM-like domain superfamily), IPR041885 (MAN1, winged-helix domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00002275 | ||||
| Corresponding_transcript | W01G7.5.1 | |||||
| Corresponding_protein | CE20129 | |||||
| Corresponding_PCR_product | cenix:80-d9 | |||||
| mv_W01G7.5 | ||||||
| mv_Y39G8C.a | ||||||
| sjj_W01G7.5 | ||||||
| sjj_Y39G8C.a | ||||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA | male_Nanopore_Roach_122339 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_43725 | ||||||
| young_adult_Nanopore_Roach_101053 | ||||||
| L4_Nanopore_Roach_51946 | ||||||
| adult_Nanopore_Roach_82987 | ||||||
| male_Nanopore_Roach_42435 | ||||||
| L2_Nanopore_Roach_93620 | ||||||
| L1_Nanopore_Roach_24932 | ||||||
| L1_Nanopore_Roach_68281 | ||||||
| male_Nanopore_Roach_42826 | ||||||
| adult_Nanopore_Roach_37075 | ||||||
| L3_Nanopore_Roach_36482 | ||||||
| L1_Nanopore_Roach_79953 | ||||||
| L3_Nanopore_Roach_75190 | ||||||
| L1_Nanopore_Roach_100860 | ||||||
| L2_Nanopore_Roach_79538 | ||||||
| L2_Nanopore_Roach_39209 | ||||||
| OSTF114F10_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_143174 | Inferred_automatically | transcript_builder.pl | ||||
| FN875957 | Inferred_automatically | transcript_builder.pl | ||||
| FN880380 | Inferred_automatically | transcript_builder.pl | ||||
| FN880381 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_52050 | Inferred_automatically | transcript_builder.pl | ||||
| FN880383 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR114F10_1 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG7454|c4_g1_i2 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (15) | ||||||
| Microarray_results (21) | ||||||
| Brief_identification | LEM protein 2 | Accession_evidence | UniProt | SP:Q9XTB5 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
