WormBase Tree Display for CDS: D1025.2
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| D1025.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | D1025 | |||
| Structure | Source_exons | 1 | 147 | |||
| 196 | 288 | |||||
| 674 | 880 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O62122 | ||
| UniProt | UniProtAcc | O62122 | ||||
| AlphaFold | entry | O62122 | ||||
| UniProt_GCRP | UniProtAcc | O62122 | ||||
| NCBI_protein | GI_number | GI:3875341 | ||||
| TREEFAM | TREEFAM_ID | TF300258 | ||||
| Protein_id | CHROMOSOME_X | CAB05472 | 1 | |||
| DB_remark | GCSH-1 protein; contains similarity to Pfam domain PF01597 (Glycine cleavage H-protein); contains similarity to Interpro domains IPR011053 (Single hybrid motif), IPR033753 (Glycine cleavage system H-protein/Simiate), IPR017453 (Glycine cleavage system H-protein, subgroup), IPR002930 (Glycine cleavage system H-protein) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00008354 | ||||
| Corresponding_transcript | D1025.2.1 | |||||
| Corresponding_protein | CE17610 | |||||
| Corresponding_PCR_product | cenix:78-c6 | |||||
| mv_D1025.2 | ||||||
| sjj_D1025.2 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA | male_Nanopore_Roach_50467 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_51570 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_8264 | ||||||
| adult_Nanopore_Roach_43754 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_19968 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_7681 | ||||||
| L4_Nanopore_Roach_28825 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_44379 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_78725 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_11559 | ||||||
| L2_Nanopore_Roach_45357 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_51421 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_43122 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_7018 | ||||||
| L3_Nanopore_Roach_12151 | ||||||
| OSTF204E1_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_266353 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR204E1_1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_9282 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_159566 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_254889 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_232450 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG149|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR204E1_2 | Inferred_automatically | transcript_builder.pl | ||||
| FN876232 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00012511 | |||||
| WBRNAi00043358 | ||||||
| WBRNAi00030328 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Glycine cleavage system H protein | Accession_evidence | UniProt | TR:O62122 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf019335 | |||||
| Method | curated |
