WormBase Tree Display for CDS: F45E4.5a
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| F45E4.5a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F45E4 | |||
| Structure | Source_exons | 1 | 37 | |||
| 82 | 220 | |||||
| 423 | 545 | |||||
| 627 | 654 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q94228 | ||
| UniProt | UniProtAcc | Q94228 | ||||
| AlphaFold | entry | Q94228 | ||||
| NCBI_protein | GI_number | GI:351049739 | ||||
| Protein_id | CHROMOSOME_IV | CCD63789 | 1 | |||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4025 | ||||
| Visible | Gene | WBGene00018470 | ||||
| Corresponding_transcript | F45E4.5a.1 | |||||
| Corresponding_protein | CE42116 | |||||
| Corresponding_PCR_product | cenix:131-g6 | |||||
| mv_F45E4.5 | ||||||
| sjj_F45E4.5 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | male_Nanopore_Roach_108615 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_121001 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_145930 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_148396 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_99707 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_118929 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_51969 | ||||||
| male_Nanopore_Roach_6876 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_93860 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_55772 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_61610 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_89088 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_97791 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_5844 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_57307 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_150925 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF128A9_1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_34587 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_6615 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_358007 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_68011 | Inferred_automatically | transcript_builder.pl | ||||
| EC003144 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_310504 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG3907|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR128A9_2 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_129376 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_41651 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_96824 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_300855 | Inferred_automatically | transcript_builder.pl | ||||
| EC000529 | Inferred_automatically | transcript_builder.pl | ||||
| EB998541 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_316043 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR128A9_1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_338707 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00110849 | |||||
| WBRNAi00047409 | ||||||
| WBRNAi00032306 | ||||||
| WBRNAi00015024 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Secreted protein | Accession_evidence | UniProt | TR:Q94228 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 16 Dec 2013 00:00:00 | WBPerson4025 | ||||
| Remark | [20000103 js] the first exon was lengthened based on BLASTN similarity with C. briggsae- | Curator_confirmed | WBPerson615 | |||
| [20030725 tb] modified C-terminus based on OSTR128A9_1. | Curator_confirmed | WBPerson1849 | ||||
| WBPerson615 | ||||||
| [20071015 tb] Added 5' exon based on EB998541. | Curator_confirmed | WBPerson1849 | ||||
| WBPerson615 | ||||||
| [20080117 tb] modified internal exon based on EB998541. | Curator_confirmed | WBPerson1849 | ||||
| WBPerson615 | ||||||
| Method | curated |
