WormBase Tree Display for CDS: C05D9.9b
expand all nodes | collapse all nodes | view schema
C05D9.9b | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C05D9 | |||
Structure | Source_exons | 1 | 93 | |||
418 | 555 | |||||
1119 | 1235 | |||||
1466 | 1537 | |||||
DB_info | Database | TrEMBL | UniProtAcc | H2KYG6 | ||
UniProt | UniProtAcc | H2KYG6 | ||||
UniProt_GCRP | UniProtAcc | H2KYG6 | ||||
AlphaFold | entry | H2KYG6 | ||||
NCBI_protein | GI_number | GI:373218790 | ||||
Protein_id | CHROMOSOME_X | CCD63148 | 1 | |||
DB_remark | contains similarity to Interpro domains IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily) | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Accession_evidence | EMBL | CV124805 | |||
Visible | Gene | WBGene00015476 | ||||
Corresponding_transcript | C05D9.9b.1 | |||||
Corresponding_protein | CE39317 | |||||
Corresponding_PCR_product | cenix:241-b10 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA | male_Nanopore_Roach_50660 | |||||
male_Nanopore_Roach_103257 | Inferred_automatically | transcript_builder.pl | ||||
male_Nanopore_Roach_124502 | Inferred_automatically | transcript_builder.pl | ||||
young_adult_Nanopore_Roach_103442 | Inferred_automatically | transcript_builder.pl | ||||
L3_Nanopore_Roach_45747 | Inferred_automatically | transcript_builder.pl | ||||
L3_Nanopore_Roach_60653 | Inferred_automatically | transcript_builder.pl | ||||
adult_Nanopore_Roach_65691 | Inferred_automatically | transcript_builder.pl | ||||
adult_Nanopore_Roach_85003 | Inferred_automatically | transcript_builder.pl | ||||
L2_Nanopore_Roach_48100 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Roach_81816 | Inferred_automatically | transcript_builder.pl | ||||
L3_Nanopore_Roach_76906 | Inferred_automatically | transcript_builder.pl | ||||
L2_Nanopore_Roach_45524 | ||||||
L2_Nanopore_Roach_81275 | Inferred_automatically | transcript_builder.pl | ||||
L4_Nanopore_Roach_53197 | Inferred_automatically | transcript_builder.pl | ||||
EC035002 | Inferred_automatically | transcript_builder.pl | ||||
elegans_PE_SS_GG582|c0_g1_i2 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Li_125922 | Inferred_automatically | transcript_builder.pl | ||||
OSTF30033G07 | Inferred_automatically | transcript_builder.pl | ||||
OSTR30033G07 | Inferred_automatically | transcript_builder.pl | ||||
YA_Nanopore_Li_154389 | Inferred_automatically | transcript_builder.pl | ||||
YA_Nanopore_Li_117363 | Inferred_automatically | transcript_builder.pl | ||||
YA_Nanopore_Li_8028 | Inferred_automatically | transcript_builder.pl | ||||
RNAi_result | WBRNAi00039767 | |||||
WBRNAi00001327 | ||||||
Microarray_results | 174077_at | |||||
A_12_P135202 | ||||||
GPL13394_WBGene00015476 | ||||||
GPL13914_C05D9.9 | ||||||
GPL14144_C05D9.9b_172-231_0.917_2_C | ||||||
GPL14144_C05D9.9b_238-297_0.921_1_B | ||||||
GPL14144_C05D9.9b_358-417_0.872_10_A | ||||||
GPL3518_CE27653 | ||||||
GPL8304_CE_WBGene00015476_A | ||||||
GPL8673_C05D9_9aP00035 | ||||||
GPL8673_C05D9_9aP00100 | ||||||
GPL8673_C05D9_9aP00106 | ||||||
GPL8673_C05D9_9bP00042 | ||||||
GPL8673_C05D9_9bP00238 | ||||||
GPL8673_C05D9_9bP00244 | ||||||
Brief_identification | TransThyretin-Related family domain | Accession_evidence | UniProt | TR:H2KYG6 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |