WormBase Tree Display for CDS: K08C9.4
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K08C9.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | K08C9 | |||
Structure | Source_exons | 1 | 138 | |||
197 | 347 | |||||
715 | 1331 | |||||
DB_info | Database | TrEMBL | UniProtAcc | Q9XUT4 | ||
UniProt | UniProtAcc | Q9XUT4 | ||||
UniProt_GCRP | UniProtAcc | Q9XUT4 | ||||
AlphaFold | entry | Q9XUT4 | ||||
NCBI_protein | GI_number | GI:3924815 | ||||
TREEFAM | TREEFAM_ID | TF316783 | ||||
Protein_id | CHROMOSOME_I | CAB04587 | 1 | |||
DB_remark | COL-65 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00000641 | ||||
Corresponding_transcript | K08C9.4.1 | |||||
Corresponding_protein | CE18860 | |||||
Corresponding_PCR_product | cenix:135-h11 | |||||
mv_K08C9.4 | ||||||
sjj2_K08C9.4 | ||||||
sjj_K08C9.4 | ||||||
Corresponding_oligo_set | 172196_x_at | |||||
A_12_P103586 | ||||||
A_12_P151960 | ||||||
Aff_K08C9.4 | ||||||
GPL13394_WBGene00000641 | ||||||
GPL13914_K08C9.4 | ||||||
GPL14144_K08C9.4_176-235_0.898_1_C | ||||||
GPL14144_K08C9.4_213-272_0.787_16_A | ||||||
GPL14144_K08C9.4_703-762_0.772_19_B | ||||||
GPL19516_CGZ0028458 | ||||||
GPL21109_K08C9.4 | ||||||
GPL3518_CE18860 | ||||||
GPL8304_CE_WBGene00000641_A | ||||||
GPL8673_K08C9_4P00001 | ||||||
GPL8673_K08C9_4P00194 | ||||||
GPL8673_K08C9_4P00201 | ||||||
GPL9450_K08C9.4 | ||||||
cea2.p.14381 | ||||||
Matching_cDNA (33) | ||||||
RNAi_result | WBRNAi00050243 | |||||
WBRNAi00034115 | ||||||
Microarray_results (19) | ||||||
Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:Q9XUT4 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |