WormBase Tree Display for CDS: F52H3.1
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F52H3.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F52H3 | |||
Structure | Source_exons | 1 | 210 | |||
327 | 1201 | |||||
1646 | 1759 | |||||
1808 | 1946 | |||||
2000 | 2248 | |||||
2293 | 2466 | |||||
2512 | 2658 | |||||
2706 | 2889 | |||||
4570 | 4670 | |||||
DB_info | Database | KEGG | KEGG_id | 2.4.1.66 | ||
SwissProt | UniProtAcc | Q20679 | ||||
UniProt | UniProtAcc | Q20679 | ||||
UniProt_GCRP | UniProtAcc | Q20679 | ||||
AlphaFold | entry | Q20679 | ||||
NCBI_protein | GI_number | GI:3877389 | ||||
TREEFAM | TREEFAM_ID | TF313826 | ||||
Protein_id | CHROMOSOME_II | CAA91321 | 1 | |||
DB_remark | LET-268 protein; contains similarity to Pfam domain PF03171 (2OG-Fe(II) oxygenase superfamily); contains similarity to Interpro domains IPR006620 (Prolyl 4-hydroxylase, alpha subunit), IPR029044 (Nucleotide-diphospho-sugar transferases), IPR044861 (Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00002497 | ||||
Corresponding_transcript | F52H3.1.1 | |||||
F52H3.1.2 | ||||||
F52H3.1.3 | ||||||
F52H3.1.4 | ||||||
Corresponding_protein | CE03397 | |||||
Corresponding_PCR_product | cenix:202-d2 | |||||
mv_F52H3.1 | ||||||
sjj_F52H3.1 | ||||||
Corresponding_oligo_set | 193937_s_at | |||||
A_12_P111596 | ||||||
Aff_F52H3.1 | ||||||
GPL13394_WBGene00002497 | ||||||
GPL13914_F52H3.1 | ||||||
GPL14144_F52H3.1_1828-1887_0.934_7_C | ||||||
GPL14144_F52H3.1_2051-2110_0.962_1_A | ||||||
GPL14144_F52H3.1_2158-2217_0.938_6_B | ||||||
GPL19516_CGZ0023268 | ||||||
GPL21109_F52H3.1.1 | ||||||
GPL3518_CE03397 | ||||||
GPL8304_CE_WBGene00002497_A | ||||||
GPL8304_CE_WBGene00002497_C | ||||||
GPL8673_F52H3_1P01115 | ||||||
GPL8673_F52H3_1P01577 | ||||||
GPL8673_F52H3_1P02124 | ||||||
Matching_cDNA (55) | ||||||
RNAi_result | WBRNAi00062665 | |||||
WBRNAi00115624 | ||||||
WBRNAi00071202 | ||||||
WBRNAi00008830 | ||||||
WBRNAi00071201 | ||||||
WBRNAi00048028 | ||||||
WBRNAi00025572 | ||||||
WBRNAi00032642 | ||||||
Microarray_results (19) | ||||||
Brief_identification | Procollagen-lysine,2-oxoglutarate 5-dioxygenase | Accession_evidence | UniProt | SP:Q20679 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |