WormBase Tree Display for CDS: Y67A6A.2a
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| Y67A6A.2a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_I | |||
| Structure | Source_exons | 1 | 247 | |||
| 1389 | 1515 | |||||
| 3082 | 3140 | |||||
| 3835 | 4626 | |||||
| 4681 | 4886 | |||||
| 4983 | 5099 | |||||
| DB_info | Database | SwissProt | UniProtAcc | O02279 | ||
| UniProtIsoformAcc | O02279-1 | |||||
| UniProt | UniProtAcc | O02279 | ||||
| UniProt_GCRP | UniProtAcc | O02279 | ||||
| AlphaFold | entry | O02279 | ||||
| NCBI_protein | GI_number | GI:14530651 | ||||
| TREEFAM | TREEFAM_ID | TF315528 | ||||
| Protein_id | CHROMOSOME_I | CAA21675 | 2 | |||
| DB_remark | NHR-62 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR001723 (Nuclear hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | ||||||
| Visible | Gene | WBGene00003652 | ||||
| Corresponding_transcript | Y67A6A.2a.1 | |||||
| Corresponding_protein | CE27305 | |||||
| Corresponding_PCR_product | cenix:18-g11 | |||||
| mv_Y67A6A.2 | ||||||
| sjj_K10C3.1 | ||||||
| sjj_Y67A6A.2 | ||||||
| Corresponding_oligo_set | 192819_at | |||||
| A_12_P100420 | ||||||
| Aff_Y67A6A.2 | ||||||
| GPL13394_WBGene00003652 | ||||||
| GPL13914_Y67A6A.2 | ||||||
| GPL14144_Y67A6A.2a_1027-1086_0.923_5_B | ||||||
| GPL14144_Y67A6A.2a_1297-1356_0.939_2_A | ||||||
| GPL14144_Y67A6A.2a_847-906_0.914_11_C | ||||||
| GPL19516_CGZ0052446 | ||||||
| GPL21109_Y67A6A.2a | ||||||
| GPL3518_CE27305 | ||||||
| GPL8304_CE_WBGene00003652_A | ||||||
| GPL8673_Y67A6A_2P00101 | ||||||
| GPL8673_Y67A6A_2P00980 | ||||||
| GPL8673_Y67A6A_2P01401 | ||||||
| GPL9450_Y67A6A.2 | ||||||
| cea2.p.23335 | ||||||
| Matching_cDNA (33) | ||||||
| RNAi_result | WBRNAi00115756 | |||||
| WBRNAi00037723 | ||||||
| WBRNAi00004776 | ||||||
| WBRNAi00003972 | ||||||
| WBRNAi00070622 | ||||||
| WBRNAi00057976 | ||||||
| WBRNAi00070623 | ||||||
| Microarray_results (21) | ||||||
| Brief_identification | Nuclear hormone receptor family member nhr-62 | Accession_evidence | UniProt | SP:O02279 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 06 Jun 2008 00:00:00 | WBPerson1983 | ||||
| Remark | [980918 jd] : incorporates K10C3.1 | |||||
| [010405 dl] Modified prediction based on mRNA AF273813. Added intron in exon 4 | Curator_confirmed | WBPerson1846 | ||||
| Associated_feature | WBsf009197 | |||||
| Method | curated |
