WormBase Tree Display for CDS: Y48G10A.2b
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| Y48G10A.2b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y48G10A | |||
| Structure | Source_exons | 1 | 93 | |||
| 148 | 294 | |||||
| 2019 | 2112 | |||||
| 2168 | 2373 | |||||
| 4188 | 4369 | |||||
| 6985 | 7000 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | H2KML5 | ||
| UniProt | UniProtAcc | H2KML5 | ||||
| AlphaFold | entry | H2KML5 | ||||
| NCBI_protein | GI_number | GI:358246512 | ||||
| Protein_id | CHROMOSOME_I | CCE72299 | 1 | |||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Feature_evidence | WBsf132867 | ||||
| From_analysis | RNASeq_Hillier_elegans | |||||
| Visible | Gene | WBGene00013019 | ||||
| Corresponding_transcript | Y48G10A.2b.1 | |||||
| Corresponding_protein | CE46828 | |||||
| Corresponding_PCR_product | mv_Y48G10A.2 | |||||
| sjj_Y48G10A.f | ||||||
| Corresponding_oligo_set (11) | ||||||
| Matching_cDNA | young_adult_Nanopore_Roach_28060 | |||||
| young_adult_Nanopore_Roach_35234 | ||||||
| L3_Nanopore_Roach_3063 | ||||||
| adult_Nanopore_Roach_100972 | ||||||
| adult_Nanopore_Roach_44945 | ||||||
| adult_Nanopore_Roach_2476 | ||||||
| RNAi_result | WBRNAi00004674 | |||||
| WBRNAi00037261 | ||||||
| Microarray_results (13) | ||||||
| Brief_identification | RING-type E3 ubiquitin transferase | Accession_evidence | UniProt | TR:H2KML5 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 27 Oct 2011 00:00:00 | WBPerson1983 | ||||
| Remark | [110029 pad] Alternate Isoform defined by SL1 feature data and confirmed by RNASeq data. | Curator_confirmed | WBPerson1983 | |||
| Feature_evidence | WBsf132867 | |||||
| From_analysis | RNASeq_Hillier_elegans | |||||
| Method | curated |
