WormBase Tree Display for Sequence: Y46E12BL

Y46E12BL DNA: Y46E12BL 46000
  SMap: S_child: Gene_child (12)
      CDS_child: Y46E12BL.1:wp154 36107 26739
        Y46E12BL.1a 33307 26739
        Y46E12BL.1b 33513 26739
        Y46E12BL.2a 14971 26567
        Y46E12BL.3 12274 14434
        Y46E12BL.3:wp154 12457 14434
        Y46E12BL.4:wp147 4649 8537
        Y46E12BL.4:wp179 378 8537
        Y46E12BL.4c 378 10228
        Y46E12BL.4d 4838 10228
        Y46E12BL.4h 378 10228
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g19_x31_II_p 6568 8117
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g7n11_x31_II_p 14971 16582
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g13n11_x31_II_p 13856 14431
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g48_x31_II_m 26885 26769
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g33n11_x31_II_p 16454 26564
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g52_x31_II_p 378 771
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g43_x31_II_p 12596 13451
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g49_x31_II_m 29387 26914
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g5_x31_II_p 6568 8534
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g27_x31_II_p 378 4852
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g25_x31_II_p 14971 26564
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g44_x31_II_p 13856 14431
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g4_x31_II_p 6568 8522
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g33_x31_II_m 33307 26742
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g59_x31_II_p 12544 13429
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g24_x31_II_p 378 4852
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g27_x31_II_p 14971 26564
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g58_x31_II_p 13979 14431
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g61_x31_II_p 13437 13952
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g11_x31_II_p 6568 8093
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g17_x31_II_p 2219 4852
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g10n11_x31_II_p 14971 26564
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g43_x31_II_p 13979 14404
        RNASEQ_embryo_him-8_20dC_post-L1_g37_x31_II_p 378 4846
        RNASEQ_embryo_him-8_20dC_post-L1_g16n11_x31_II_p 14971 26564
        RNASEQ_embryo_him-8_20dC_post-L1_g19_x31_II_p 6568 8156
        RNASEQ_embryo_him-8_20dC_post-L1_g24n11_x31_II_p 16454 16582
        RNASEQ_embryo_him-8_20dC_post-L1_g21_x31_II_p 13856 14431
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g64_x31_II_p 24819 26564
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g34_x31_II_p 13856 14431
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g38_x31_II_m 33513 26742
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g49_x31_II_p 19197 21913
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g62_x31_II_p 2219 2254
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g42_x31_II_p 22106 24116
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g28n11_x31_II_p 14971 19085
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g16_x31_II_p 6568 8105
        RNASEQ_L4_soma_JK1107_no_DNaseI_g45_x31_II_p 22134 23598
        RNASEQ_L4_soma_JK1107_no_DNaseI_g44_x31_II_p 13979 14431
        RNASEQ_L4_soma_JK1107_no_DNaseI_g63_x31_II_p 17575 19304
        RNASEQ_L4_soma_JK1107_no_DNaseI_g25_x31_II_p 6568 8003
        RNASEQ_L4_soma_JK1107_no_DNaseI_g55_x31_II_p 16454 17475
        RNASEQ_L4_soma_JK1107_no_DNaseI_g34_x31_II_p 2219 4852
        RNASEQ_L4_soma_JK1107_no_DNaseI_g76_x31_II_p 21401 21637
        RNASEQ_L4_soma_JK1107_no_DNaseI_g19n11_x31_II_p 14971 15221
        RNASEQ_L4_soma_JK1107_no_DNaseI_g46_x31_II_p 24426 26369
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g31n11_x31_II_p 16454 16582
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g23n11_x31_II_p 14971 26564
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g4_x31_II_p 6568 8099
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g43_x31_II_p 378 4852
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g32_x31_II_p 13856 14431
        RNASEQ_early_embryo_g25n11_x31_II_p 16454 16582
        RNASEQ_early_embryo_g26_x31_II_p 378 771
        RNASEQ_early_embryo_g5_x31_II_p 6568 8111
        RNASEQ_early_embryo_g12n11_x31_II_p 14971 26564
        RNASEQ_early_embryo_g16_x31t1_II_p 13856 14431
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g28_x31_II_p 378 771
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g4_x31_II_p 6568 8252
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g15n11_x31_II_p 14971 26564
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g24n11_x31_II_p 16454 16582
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g36_x31_II_p 13856 14431
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g39_x31_II_p 13856 14431
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g13_x31_II_p 6568 8078
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g13e2k89_x31_II_p 6568 6651
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g24_x31_II_p 15183 26564
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g55_x31_II_p 15183 16365
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g22_x31_II_p 378 4852
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g52_x31_II_p 12586 13459
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g27_x31_II_p 16454 26564
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g17_x31_II_p 6568 8099
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g22e2k115_x31_II_p 2001 2287
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g17_x31_II_p 6568 8006
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g29_x31_II_p 378 4846
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g56_x31_II_p 13979 14350
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g7n11_x31t1_II_p 14971 26564
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g42_x31_II_p 2219 4852
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g23_x31_II_p 6568 8006
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g24_x31_II_p 17629 26564
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g57_x31_II_p 13856 14431
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g41_x31_II_p 15183 17595
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g6n11_x31_II_p 14971 16582
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g25_x31_II_p 6568 8267
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g72_x31_II_m 33298 30174
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g40n11_x31_II_p 16454 26564
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g87_x31_II_p 2219 4849
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g20_x31_II_p 13856 14431
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g53_x31_II_p 2219 2254
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g29n11_x31_II_p 16454 26564
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g19_x31_II_p 6568 8087
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g3n11_x31_II_p 14971 16582
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g16_x31_II_p 13856 14431
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g54_x31_II_m 29398 26925
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g28_x31_II_p 21731 26495
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g45_x31_II_p 16454 17499
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g7n11_x31_II_p 14971 15161
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g52_x31_II_p 18969 21634
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g55_x31_II_m 29954 29381
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g16_x31_II_p 6568 8093
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g60_x31_II_p 2219 4846
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g38_x31_II_m 33307 30150
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g18_x31_II_p 13856 14431
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g17n11_x31_II_p 6568 8246
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g72_x31_II_p 2219 2254
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g70_x31_II_m 29922 29457
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g64_x31_II_m 29387 26920
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g23_x31_II_p 13856 14431
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g9n11_x31_II_p 14971 26564
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g61_x31_II_m 33307 30171
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g24n11_x31_II_p 17575 17749
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g54_x31_II_m 29922 29463
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g8_x31_II_p 13856 14431
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g61_x31_II_m 33307 29946
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g17_x31_II_p 6568 8024
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g10n11_x31_II_p 14971 26564
        Y46E12BL.gc1 378 5587
        Y46E12BL.gc2 7860 8537
        Y46E12BL.gc3 12313 14434
        Y46E12BL.gc4 14971 26567
        Y46E12BL.gc5 32850 29276
        ContigII.elegans.jigsaw.3567.mRNA3567 14925 26741
        ContigII.elegans.jigsaw.3566.mRNA3566 12274 14610
        ContigII.elegans.jigsaw.3568.mRNA3568 33311 26287
        ContigII.elegans.jigsaw.3565.mRNA3565 315 8859
        AG1201_Y46E12BL.4.T16 378 3662
        AG1201_Y46E12BL.4.T13 378 10228
        AG1201_Y46E12BL.4.T14 378 10228
        AG1201_Y46E12BL.4.T4 4640 10228
        AG1201_Y46E12BL.4.T3 6568 10228
        AG1201_Y46E12BL.4.T1 10668 10850
        AG1201_Y46E12BL.3.T5 12274 13459
        AG1201_Y46E12BL.3.T4 12274 13462
        AG1201_Y46E12BL.3.T3 12274 14434
        AG1201_Y46E12BL.3.T17 13183 13459
        AG1201_Y46E12BL.3.T13 13183 13462
        AG1201_Y46E12BL.3.T10 13189 13459
        AG1201_Y46E12BL.3.T12 13856 14434
        AG1201_Y46E12BL.3.T1 14306 14434
        AG1201_Y46E12BL.2.T6 14971 23625
        AG1201_Y46E12BL.2.T2 14971 26567
        AG1201_Y46E12BL.2.T7 16454 26567
        AG1201_Y46E12BL.2.T1 17575 26567
        AG1201_Y46E12BL.1.T1 33513 26739
      Transcript (18)
      PCR_product: cenix:177-a11 7937 8834
        cenix:177-g10 29884 30299
        cenix:177-h10 19124 20017
        cenix:189-d8 13847 13996
        sjj2_Y46E12BL.1 29247 30347
        sjj2_Y46E12BL.2 23685 24594
        sjj2_Y46E12BL.4 7861 8510
      Allele (1051)
      Feature_object (415)
      Feature_data: Y46E12BL:Polysome 1 46000
        Y46E12BL:TranscriptionallyActiveRegion 1 46000
        Y46E12BL:ChIPSeqTF 1 46000
        Y46E12BL:TRF 1 46000
        Y46E12BL:Dust 1 46000
        Y46E12BL:inverted 1 46000
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_II
    Overlap_right: 2RSSE 45901
    Overlap_left: Y46E12BM
    Clone_left_end: Y46E12BL 1
    Clone_right_end: Y46E12BL 46000
  DB_info: Database: EMBL NDB_AC FO080087
        NDB_ID _AC084156
        NDB_SV FO080087.1
    Secondary_accession: AC084156
    DB_remark: The 5' clone is Y46E12BM, 200 bp overlap.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Madsen C
      Du H
    From_laboratory: RW
    Date: 06 Oct 2000 00:00:00
    Date_directory
    Species: Caenorhabditis elegans
  Visible: Clone: Y46E12BL
    Remark: [20020718 db] flipped this clone
  Properties: Genomic_canonical
    Checksum: MD5: 87c649af2327bfaea45c3d674a2a537c
    Status: Finished
      Submitted: 06 Oct 2000 00:00:00
  Map: Sequence-II
  Interpolated_map_position: II 24.6438
  Method: Genomic_canonical