WormBase Tree Display for Sequence: Y17D7C
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| Y17D7C | DNA | Y17D7C | 21691 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00045366 | 16568 | 13386 | |
| WBGene00050903 | 6525 | 7409 | ||||
| WBGene00194680 | 2607 | 4653 | ||||
| WBGene00196033 | 11174 | 11054 | ||||
| WBGene00219343 | 18556 | 17545 | ||||
| WBGene00077454 | 1908 | 2155 | ||||
| WBGene00198676 | 9889 | 9740 | ||||
| WBGene00219617 | 18693 | 18156 | ||||
| WBGene00012456 | 12784 | 8650 | ||||
| CDS_child (104) | ||||||
| Transcript | Y17D7C.6b | 2675 | 4441 | |||
| Y17D7C.7 | 11174 | 11054 | ||||
| Y17D7C.8 | 9889 | 9740 | ||||
| Y17D7C.9 | 18556 | 17545 | ||||
| Y17D7C.10 | 18693 | 18156 | ||||
| Y17D7C.1a.1 | 593 | 1347 | ||||
| Y17D7C.2.1 | 12784 | 8650 | ||||
| Y17D7C.6a.1 | 2607 | 4653 | ||||
| Pseudogene | Y17D7C.3 | 16568 | 13386 | |||
| Y17D7C.4 | 6525 | 7409 | ||||
| Y17D7C.5 | 1908 | 2155 | ||||
| Y17D7C.6:wp224 | 2675 | 4631 | ||||
| PCR_product | cenix:131-f12 | 10157 | 10685 | |||
| cenix:188-g6 | 4330 | 4479 | ||||
| mv_Y17D7C.1 | 809 | 4439 | ||||
| mv_Y17D7C.2 | 8474 | 12653 | ||||
| sjj_Y17D7C.1 | 648 | 2813 | ||||
| sjj_Y17D7C.2 | 10208 | 12422 | ||||
| Allele (316) | ||||||
| Oligo_set | Aff_Y17D7C.1 | 993 | 4441 | |||
| Aff_Y17D7C.2 | 12326 | 8472 | ||||
| Aff_ZK384.3 | 22099 | 21500 | ||||
| Feature_object (257) | ||||||
| Feature_data | Y17D7C:Polysome | 1 | 21691 | |||
| Y17D7C:TranscriptionallyActiveRegion | 1 | 21691 | ||||
| Y17D7C:ChIPSeqTF | 1 | 21691 | ||||
| Y17D7C:TRF | 1 | 21691 | ||||
| Y17D7C:Dust | 1 | 21691 | ||||
| Y17D7C:inverted | 1 | 21691 | ||||
| Homol_data | Y17D7C:RNAi | 1 | 21691 | |||
| Y17D7C:SAGE | 1 | 21691 | ||||
| Y17D7C:wublastx_brenneri | 1 | 21691 | ||||
| Y17D7C:wublastx_briggsae | 1 | 21691 | ||||
| Y17D7C:wublastx_japonica | 1 | 21691 | ||||
| Y17D7C:wublastx_pristionchus | 1 | 21691 | ||||
| Y17D7C:wublastx_remanei | 1 | 21691 | ||||
| Y17D7C:wublastx_worm | 1 | 21691 | ||||
| Y17D7C:RepeatMasker | 1 | 21691 | ||||
| Structure | From | Source | CHROMOSOME_V | |||
| Overlap_right | ZK384 | 21581 | ||||
| Overlap_left | Y69H2 | |||||
| Clone_left_end | Y17D7 | 1 | ||||
| ZK384 | 21581 | |||||
| Y17D7C | 1 | |||||
| Clone_right_end | Y17D7C | 21691 | ||||
| DB_info | Database | EMBL | NDB_AC | AL021471 | ||
| NDB_SV | AL021471.1 | |||||
| Secondary_accession | Z92818 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Kershaw JK | ||||
| From_laboratory | HX | |||||
| Date_directory | 980414 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | Y17D7C | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | a9237cde9a59176b256bb79bb578f646 | ||||
| Status | Finished | 14 Apr 1998 00:00:00 | ||||
| Submitted | 23 Jan 1998 00:00:00 | |||||
| Annotated | 01 Jan 1980 00:00:00 | |||||
| Map | Sequence-V | Ends | Left | 10800 | ||
| Right | 10827 | |||||
| Interpolated_map_position | V | 17.4153 | ||||
| Assembly_tags | Clone left end | 1 | 6 | Y17D7 | ||
| 21581 | 21584 | ZK384 | ||||
| Finished Left | 1 | 6 | Y17D7C | |||
| Finished Right | 21691 | 21683 | Y17D7C | |||
| annotation | 21411 | 20484 | tandem repeat element - 20 or 21 bp. AACAATCTATTTTTTtCGTGT this assembly show 47 copies - restriction digest with Xhol confirms the approximate size but suggests approx 26 more copies. | |||
| Method | Genomic_canonical |
