WormBase Tree Display for CDS: Y15E3A.1a
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Y15E3A.1a | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y15E3A | |||
Structure | Source_exons | 1 | 161 | |||
219 | 324 | |||||
376 | 464 | |||||
3285 | 3380 | |||||
3449 | 3501 | |||||
3553 | 3710 | |||||
3987 | 4390 | |||||
4439 | 4690 | |||||
4982 | 5087 | |||||
DB_info | Database | SwissProt | UniProtAcc | Q9U2R6 | ||
UniProtIsoformAcc | Q9U2R6-1 | |||||
UniProt | UniProtAcc | Q9U2R6 | ||||
UniProt_GCRP | UniProtAcc | Q9U2R6 | ||||
AlphaFold | entry | Q9U2R6 | ||||
NCBI_protein | GI_number | GI:14530595 | ||||
TREEFAM | TREEFAM_ID | TF350737 | ||||
Protein_id | CHROMOSOME_X | CAB60329 | 2 | |||
DB_remark | NHR-91 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR001723 (Nuclear hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Accession_evidence | NDB | AY349017 | |||
Visible | Gene | WBGene00003681 | ||||
Corresponding_transcript | Y15E3A.1a.1 | |||||
Y15E3A.1a.2 | ||||||
Y15E3A.1a.3 | ||||||
Y15E3A.1a.4 | ||||||
Corresponding_protein | CE27779 | |||||
Corresponding_PCR_product | cenix:142-c1 | |||||
mv_Y15E3A.1 | ||||||
sjj_Y15E3B.a | ||||||
sjj_Y15E3B.b | ||||||
Corresponding_oligo_set (15) | ||||||
Matching_cDNA (37) | ||||||
RNAi_result (11) | ||||||
Microarray_results (18) | ||||||
Brief_identification | Nuclear hormone receptor family member nhr-91 | Accession_evidence | UniProt | SP:Q9U2R6 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 17 May 2001 00:00:00 | WBPerson1846 | ||||
Remark | [alt] Alternate isoform defined by cDNA AY349017 | |||||
[010517 dl] Modified prediction based on mRNA AF273834 | Curator_confirmed | WBPerson1846 | ||||
Associated_feature | WBsf006086 | |||||
WBsf015825 | ||||||
Method | curated |