WormBase Tree Display for Sequence: Y102A5D
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| Y102A5D | DNA | Y102A5D | 25454 | ||
|---|---|---|---|---|---|
| SMap | S_child (11) | ||||
| Structure | From | Source | CHROMOSOME_V | ||
| Overlap_right | F40D4 | 25351 | |||
| Overlap_left | ZK218 | ||||
| Clone_left_end | F40D4 | 25351 | |||
| Y102A5D | 1 | ||||
| Clone_right_end | ZK218 | 104 | |||
| Y102A5D | 25454 | ||||
| DB_info | Database | EMBL | NDB_AC | AL031628 | |
| NDB_SV | AL031628.2 | ||||
| Secondary_accession | Z99711 | ||||
| DB_remark | 5S RNA tandem repeat, EMBL accession X16224. (Nelson & Honda Gene (1985) 38:245-251). It starts in cosmid CEZK218. Approximately 90-100 copies of the 1Kb repeat are thought to exist. Due to difficulties in accurately sequencing the tandem array only 12 copies are represented here. At least 2 forced joins have been made and this is one region where sequence has been derived from a single clone | ||||
| Keyword | HTG | ||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | |||
| Origin | From_author | Gardner AE | |||
| From_laboratory | HX | ||||
| Date_directory | 980714 | ||||
| Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000001 | ||||
| Visible | Clone | Y102A5D | |||
| Remark | Transposon Y102A5D.2 converted into an S_Child [020208 kj] | ||||
| Properties | Genomic_canonical | ||||
| Checksum | MD5 | 3017e1474cfb0e9d02090625462d547b | |||
| Status | Finished | 14 Jul 1998 00:00:00 | |||
| Submitted | 22 Sep 1998 00:00:00 | ||||
| Annotated | 01 Jan 1980 00:00:00 | ||||
| Map | Sequence-V | Ends | Left | 9795 | |
| Right | 9884 | ||||
| Interpolated_map_position | V | 12.8026 | |||
| Assembly_tags | Finished Left | 1 | 4 | Y102A5D | |
| Clone right end | 101 | 104 | ZK218 | ||
| Finished Right | 25451 | 25454 | Y102A5D | ||
| Clone left end | 25351 | 25354 | F40D4 | ||
| annotation | 1 | 11781 | First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[x] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here - 5S RNA tandem repeat, EMBL accession X16224. (Nelson & Honda Gene (1985) 38:245-251). It starts in cosmid ZK218. Approximately 90 - 110 copies of the 1 kb repeat are thought to exist. Due to difficulties in accurately sequencing the tandem array only 12 copies are represented here. At least 2 forced joins have been made, and there is one single clone region. | ||
| Method | Genomic_canonical |
