WormBase Tree Display for Variation: WBVar02151586

WBVar02151586 Name: Public_name: tm11246
    HGVSg: CHROMOSOME_IV:g.11354561_11362630del
  Sequence_details: SMap: S_parent: Sequence: T01G1
    Flanking_sequences: caagcaaattcttactgcaccatcacaatc tgaccacttttttgtaaaaaatttggttgc
    Mapping_target: T01G1
    Source_location: 7 CHROMOSOME_IV 11354560 11362631 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm11246_external
      tm11246_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 11246
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00011337
      WBGene00014828
      WBGene00044025
      WBGene00002223
    Transcript: T01G1.4.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-5/6
        Exon_number: 1-7/7
      T01G1.1e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-11/20
        Exon_number: 1-11/21
      T01G1.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 154-?
        CDS_position: 126-?
        Protein_position: 42-?
        Intron_number: 2-4/5
        Exon_number: 2-6/6
      T01G1.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-11/22
        Exon_number: 1-11/23
      T01G1.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-11/22
        Exon_number: 1-11/23
    Pseudogene: T01G1.t1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Remark: 7129/7130-15199/15200 (8070 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele