WormBase Tree Display for Variation: WBVar02151184

WBVar02151184 Name: Public_name: tm10823
    HGVSg: CHROMOSOME_IV:g.4034648_4042166del
  Sequence_details: SMap: S_parent: Sequence: F35F11
    Flanking_sequences: ttttgtcaattttgtagcaaattttgtgta attgtttatcgaacattttgctgctaatca
    Mapping_target: F35F11
    Source_location: 7 CHROMOSOME_IV 4034647 4042167 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm10823_external
      tm10823_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10823
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018066
      WBGene00018065
      WBGene00020930
    Transcript: W02C12.3j.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/9
        Exon_number: 1/10
      F35F11.2.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-5/6
        Exon_number: 1-7/7
      W02C12.3i.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/10
        Exon_number: 1/11
      W02C12.3d.2 VEP_consequence: splice_donor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/11
        Exon_number: 1/12
    Pseudogene: F35F11.3 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Remark: 10137/10138-17656/17657 (7519 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele