WormBase Tree Display for Variation: WBVar02150597

WBVar02150597 Name: Public_name: tm13138
    HGVSg: CHROMOSOME_X:g.2577870_2578487del
  Sequence_details: SMap: S_parent: Sequence: H01M10
    Flanking_sequences: tcgttgtaagcatccaaaagatccatctgc tttacttttgatggattgcgacgagttttt
    Mapping_target: H01M10
    Source_location: 7 CHROMOSOME_X 2577869 2578488 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm13138_external
      tm13138_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 13138
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00019143
      WBGene00045268
    Transcript: H01M10.1.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 777-?
        CDS_position: 771-?
        Protein_position: 257-?
        Exon_number: 7-8/8
      H01M10.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 129-?
        CDS_position: 120-?
        Protein_position: 40-?
        Intron_number: 2/3
        Exon_number: 2-4/4
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Remark: 496/497-1114/1115(618 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele