WormBase Tree Display for Variation: WBVar02148380

WBVar02148380 Name: Public_name: tm10645
    Other_name: T09A12.4c.1:c.638-19_721+4del
      T09A12.4a.1:c.176-19_259+4del
      T09A12.4f.1:c.638-19_721+4del
      T09A12.4b.1:c.4_106+4del
      T09A12.4h.1:c.176-19_259+4del
      T09A12.4d.1:c.416-19_499+4del
      T09A12.4j.1:c.4_106+4del
      T09A12.4g.1:c.416-19_499+4del
    HGVSg: CHROMOSOME_IV:g.8229245_8229351del
  Sequence_details: SMap: S_parent: Sequence: T09A12
    Flanking_sequences: tgaaatttcctacagaaaactaaaaaagac cattacagttaatattttgatctttatttg
    Mapping_target: T09A12
    Source_location: 7 CHROMOSOME_IV 8229244 8229352 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm10645_external
      tm10645_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10645
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003656
    Transcript: T09A12.4i.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/7
        Exon_number: 1/8
      T09A12.4c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4c.1:c.638-19_721+4del
        Intron_number: 5-6/13
        Exon_number: 6/14
      T09A12.4b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4b.1:c.4_106+4del
        cDNA_position: 2488-?
        CDS_position: 4-?
        Protein_position: 2-?
        Intron_number: 2/9
        Exon_number: 2/10
      T09A12.4f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4f.1:c.638-19_721+4del
        Intron_number: 5-6/13
        Exon_number: 6/14
      T09A12.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4a.1:c.176-19_259+4del
        Intron_number: 1-2/9
        Exon_number: 2/10
      T09A12.4d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4d.1:c.416-19_499+4del
        Intron_number: 3-4/10
        Exon_number: 4/11
      T09A12.4g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4g.1:c.416-19_499+4del
        Intron_number: 3-4/10
        Exon_number: 4/11
      T09A12.4j.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4j.1:c.4_106+4del
        cDNA_position: 227-?
        CDS_position: 4-?
        Protein_position: 2-?
        Intron_number: 2/9
        Exon_number: 2/10
      T09A12.4e.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/7
        Exon_number: 1/8
      T09A12.4h.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T09A12.4h.1:c.176-19_259+4del
        Intron_number: 1-2/8
        Exon_number: 2/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 15365/15366-15472/15473 (107 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele