WormBase Tree Display for Variation: WBVar02139816
expand all nodes | collapse all nodes | view schema
WBVar02139816 | Evidence | Paper_evidence | WBPaper00045317 | |||
---|---|---|---|---|---|---|
Name | Public_name | h14466 | ||||
Other_name | B0563.6b.1:c.86-3C>T | |||||
B0563.6b.2:c.86-3C>T | ||||||
B0563.6a.1:c.113-3C>T | ||||||
B0563.6c.1:c.113-3C>T | ||||||
HGVSg | CHROMOSOME_X:g.9142197C>T | |||||
Sequence_details | SMap | S_parent | Sequence | B0563 | ||
Flanking_sequences | CAAAAGTTTACGGAAACAGGAAAATGAAACGTATTTCTTA | AGGTATTGTTGGAAATATCACAAATTTGATGGTTCTTGCA | ||||
Mapping_target | CHROMOSOME_X | |||||
Source_location | 200 | CHROMOSOME_X | 9142133 | 9142133 | ||
Type_of_mutation | Substitution | C | T | |||
SeqStatus | Sequenced | |||||
Variation_type | Allele | |||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00023861 | |||||
Laboratory | KR | |||||
Analysis | WGS_Rose | |||||
Status | Live | |||||
Affects | Gene | WBGene00015263 | ||||
Transcript | B0563.6a.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | |||||
HGVSc | B0563.6a.1:c.113-3C>T | |||||
Intron_number | 3/8 | |||||
B0563.6b.2 | VEP_consequence | splice_region_variant,intron_variant | ||||
VEP_impact | LOW | |||||
HGVSc | B0563.6b.2:c.86-3C>T | |||||
Intron_number | 3/8 | |||||
B0563.6b.1 | VEP_consequence | splice_region_variant,intron_variant | ||||
VEP_impact | LOW | |||||
HGVSc | B0563.6b.1:c.86-3C>T | |||||
Intron_number | 2/7 | |||||
B0563.6c.1 | VEP_consequence | splice_region_variant,intron_variant | ||||
VEP_impact | LOW | |||||
HGVSc | B0563.6c.1:c.113-3C>T | |||||
Intron_number | 2/8 | |||||
Reference | WBPaper00040589 | |||||
WBPaper00000975 | ||||||
WBPaper00003985 | ||||||
WBPaper00000699 | ||||||
WBPaper00045317 | ||||||
Method | WGS_Rose |