WormBase Tree Display for Variation: WBVar02138595
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| WBVar02138595 | Evidence | Paper_evidence | WBPaper00045317 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | h4817 | ||||
| Other_name | M02A10.2e.1:c.751-199G>A | |||||
| CE07386:p.Ser28= | ||||||
| M02A10.2c.1:c.652-199G>A | ||||||
| M02A10.2b.1:c.652-199G>A | ||||||
| M02A10.2a.1:c.652-199G>A | ||||||
| M02A10.2f.1:c.751-199G>A | ||||||
| M02A10.2d.1:c.652-199G>A | ||||||
| M02A10.1.1:c.84C>T | ||||||
| M02A10.2a.2:c.652-199G>A | ||||||
| HGVSg | CHROMOSOME_X:g.706900C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | M02A10 | ||
| Flanking_sequences | ATCAGATTGCAATTCGCAAAAGCTCTTTTTCCACTCAATC | ACAAGCACTCAAGCACACAGTGAAACGGAACTTCACCCTT | ||||
| Mapping_target | CHROMOSOME_X | |||||
| Source_location | 200 | CHROMOSOME_X | 706900 | 706900 | ||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | Allele | |||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00023661 | |||||
| Laboratory | KR | |||||
| Analysis | WGS_Rose | |||||
| Status | Live | |||||
| Affects | Gene | WBGene00019722 | ||||
| WBGene00002150 | ||||||
| Transcript | M02A10.2f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | M02A10.2f.1:c.751-199G>A | |||||
| Intron_number | 8/15 | |||||
| M02A10.2c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | M02A10.2c.1:c.652-199G>A | |||||
| Intron_number | 9/17 | |||||
| M02A10.2a.2 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | M02A10.2a.2:c.652-199G>A | |||||
| Intron_number | 9/16 | |||||
| M02A10.2a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | M02A10.2a.1:c.652-199G>A | |||||
| Intron_number | 8/15 | |||||
| M02A10.2d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | M02A10.2d.1:c.652-199G>A | |||||
| Intron_number | 8/15 | |||||
| M02A10.2e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | M02A10.2e.1:c.751-199G>A | |||||
| Intron_number | 8/15 | |||||
| M02A10.2b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | M02A10.2b.1:c.652-199G>A | |||||
| Intron_number | 7/15 | |||||
| M02A10.1.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | M02A10.1.1:c.84C>T | |||||
| HGVSp | CE07386:p.Ser28= | |||||
| cDNA_position | 111 | |||||
| CDS_position | 84 | |||||
| Protein_position | 28 | |||||
| Exon_number | 2/5 | |||||
| Codon_change | tcC/tcT | |||||
| Amino_acid_change | S | |||||
| Reference | WBPaper00040589 | |||||
| WBPaper00000975 | ||||||
| WBPaper00003985 | ||||||
| WBPaper00000699 | ||||||
| WBPaper00045317 | ||||||
| Method | WGS_Rose |
