WormBase Tree Display for Variation: WBVar02137882

WBVar02137882 Evidence: Paper_evidence: WBPaper00045317
  Name: Public_name: h14995
    Other_name: Y32B12C.5:n.1275+1382G>A
      CE19067:p.Phe178=
      Y32B12C.1.1:c.534C>T
    HGVSg: CHROMOSOME_V:g.16607274C>T
  Sequence_details: SMap: S_parent: Sequence: Y32B12C
    Flanking_sequences: ACGAGCAACTGTGGGACTTTGACAATATTCCTGATGGATT CAGCCAATGCTGGAACTGCACCATTTAAAAAAAGACCAAG
    Mapping_target: CHROMOSOME_V
    Source_location: 200 CHROMOSOME_V 16607247 16607247
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00023767
    Laboratory: KR
    Analysis: WGS_Rose
    Status: Live
  Affects: Gene: WBGene00012525
      WBGene00194769
    Transcript: Y32B12C.1.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y32B12C.1.1:c.534C>T
        HGVSp: CE19067:p.Phe178=
        cDNA_position: 540
        CDS_position: 534
        Protein_position: 178
        Exon_number: 4/6
        Codon_change: ttC/ttT
        Amino_acid_change: F
    Pseudogene: Y32B12C.5 VEP_consequence: intron_variant,non_coding_transcript_variant
        VEP_impact: MODIFIER
        HGVSc: Y32B12C.5:n.1275+1382G>A
        Intron_number: 3/3
  Reference: WBPaper00040589
    WBPaper00000975
    WBPaper00003985
    WBPaper00000699
    WBPaper00045317
  Method: WGS_Rose