WormBase Tree Display for Variation: WBVar02134876
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| WBVar02134876 | Evidence | Paper_evidence | WBPaper00045317 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | h10347 | ||||
| Other_name | F07C6.4f.1:c.1599+277G>A | |||||
| F07C6.4c.1:c.381+277G>A | ||||||
| F07C6.4c.2:c.381+277G>A | ||||||
| M02B1.4.1:c.612C>T | ||||||
| F07C6.4h.1:c.1110+277G>A | ||||||
| F07C6.4b.1:c.585+277G>A | ||||||
| F07C6.4e.1:c.1599+277G>A | ||||||
| F07C6.4d.1:c.1599+277G>A | ||||||
| CE43879:p.Ser204= | ||||||
| F07C6.4g.1:c.1110+277G>A | ||||||
| HGVSg | CHROMOSOME_IV:g.12824098G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | M02B1 | ||
| Flanking_sequences | TCATTAGTTGAAGAGCCACGATTGCGTTGACACTGCACAC | GAGAGGGAGAAGAATGCGCCGATTGAGAGTCCACCTGGAA | ||||
| Mapping_target | CHROMOSOME_IV | |||||
| Source_location | 200 | CHROMOSOME_IV | 12824066 | 12824066 | ||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | Allele | |||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00023777 | |||||
| Laboratory | KR | |||||
| Analysis | WGS_Rose | |||||
| Status | Live | |||||
| Affects | Gene | WBGene00010829 | ||||
| WBGene00008555 | ||||||
| Transcript | F07C6.4f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | F07C6.4f.1:c.1599+277G>A | |||||
| Intron_number | 13/18 | |||||
| F07C6.4d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F07C6.4d.1:c.1599+277G>A | |||||
| Intron_number | 13/18 | |||||
| M02B1.4.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | M02B1.4.1:c.612C>T | |||||
| HGVSp | CE43879:p.Ser204= | |||||
| cDNA_position | 666 | |||||
| CDS_position | 612 | |||||
| Protein_position | 204 | |||||
| Exon_number | 6/7 | |||||
| Codon_change | tcC/tcT | |||||
| Amino_acid_change | S | |||||
| F07C6.4c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F07C6.4c.1:c.381+277G>A | |||||
| Intron_number | 4/10 | |||||
| F07C6.4b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F07C6.4b.1:c.585+277G>A | |||||
| Intron_number | 5/11 | |||||
| F07C6.4c.2 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F07C6.4c.2:c.381+277G>A | |||||
| Intron_number | 13/19 | |||||
| F07C6.4h.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F07C6.4h.1:c.1110+277G>A | |||||
| Intron_number | 7/11 | |||||
| F07C6.4e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F07C6.4e.1:c.1599+277G>A | |||||
| Intron_number | 13/16 | |||||
| F07C6.4g.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F07C6.4g.1:c.1110+277G>A | |||||
| Intron_number | 7/12 | |||||
| Reference | WBPaper00040589 | |||||
| WBPaper00000975 | ||||||
| WBPaper00003985 | ||||||
| WBPaper00000699 | ||||||
| WBPaper00045317 | ||||||
| Method | WGS_Rose |
