WormBase Tree Display for Variation: WBVar02133615
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WBVar02133615 | Evidence | Paper_evidence | WBPaper00045317 | |||
---|---|---|---|---|---|---|
Name | Public_name | h14412 | ||||
Other_name | Y37E11B.2.5:c.-160-1G>A | |||||
Y37E11B.2.6:c.-153G>A | ||||||
Y37E11B.2.3:c.-156-1G>A | ||||||
Y37E11B.2.1:c.-164-1G>A | ||||||
Y37E11B.2.7:c.-213G>A | ||||||
Y37E11B.2.4:c.-152-1G>A | ||||||
Y37E11B.2.2:c.-212-1G>A | ||||||
HGVSg | CHROMOSOME_IV:g.3578625G>A | |||||
Sequence_details | SMap | S_parent | Sequence | Y37E11B | ||
Flanking_sequences | GTTATACATACGATTTATTCTGACAATATAAAAATGTTCA | CTTAATTGGAAACTTCGGAGATATGCAATGCATAGTAGCA | ||||
Mapping_target | CHROMOSOME_IV | |||||
Source_location | 200 | CHROMOSOME_IV | 3578620 | 3578620 | ||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | Allele | |||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00023861 | |||||
Laboratory | KR | |||||
Analysis | WGS_Rose | |||||
Status | Live | |||||
Affects | Gene | WBGene00021375 | ||||
Transcript | Y37E11B.2.2 | VEP_consequence | splice_acceptor_variant | |||
VEP_impact | HIGH | |||||
HGVSc | Y37E11B.2.2:c.-212-1G>A | |||||
Intron_number | 1/4 | |||||
Y37E11B.2.5 | VEP_consequence | splice_acceptor_variant | ||||
VEP_impact | HIGH | |||||
HGVSc | Y37E11B.2.5:c.-160-1G>A | |||||
Intron_number | 1/5 | |||||
Y37E11B.2.7 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y37E11B.2.7:c.-213G>A | |||||
cDNA_position | 62 | |||||
Exon_number | 1/4 | |||||
Y37E11B.2.4 | VEP_consequence | splice_acceptor_variant | ||||
VEP_impact | HIGH | |||||
HGVSc | Y37E11B.2.4:c.-152-1G>A | |||||
Intron_number | 1/5 | |||||
Y37E11B.2.6 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y37E11B.2.6:c.-153G>A | |||||
cDNA_position | 166 | |||||
Exon_number | 1/5 | |||||
Y37E11B.2.3 | VEP_consequence | splice_acceptor_variant | ||||
VEP_impact | HIGH | |||||
HGVSc | Y37E11B.2.3:c.-156-1G>A | |||||
Intron_number | 1/5 | |||||
Y37E11B.2.1 | VEP_consequence | splice_acceptor_variant | ||||
VEP_impact | HIGH | |||||
HGVSc | Y37E11B.2.1:c.-164-1G>A | |||||
Intron_number | 1/5 | |||||
Reference | WBPaper00040589 | |||||
WBPaper00000975 | ||||||
WBPaper00003985 | ||||||
WBPaper00000699 | ||||||
WBPaper00045317 | ||||||
Method | WGS_Rose |