WormBase Tree Display for Variation: WBVar02133513

WBVar02133513 Evidence: Paper_evidence: WBPaper00045317
  Name: Public_name: h4022
    Other_name: Y54G2A.17a.3:c.1552-105A>T
      Y54G2A.17a.1:c.1552-105A>T
      Y54G2A.17b.1:c.1612-105A>T
      Y54G2A.17a.2:c.1552-105A>T
    HGVSg: CHROMOSOME_IV:g.2872406T>A
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: CAAAATACTTTTTTTTTGAAATTTTGAAAATTTTTCAAAT CCGGCAATTTGCCGATTTGCCGAAAATTTTCAATTCCGGC
    Mapping_target: CHROMOSOME_IV
    Source_location: 200 CHROMOSOME_IV 2872403 2872403
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00023775
    Laboratory: KR
    Analysis: WGS_Rose
    Status: Live
  Affects: Gene: WBGene00021882
    Transcript: Y54G2A.17a.3 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.17a.3:c.1552-105A>T
        Intron_number: 6/7
      Y54G2A.17b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.17b.1:c.1612-105A>T
        Intron_number: 7/7
      Y54G2A.17a.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.17a.2:c.1552-105A>T
        Intron_number: 7/8
      Y54G2A.17a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.17a.1:c.1552-105A>T
        Intron_number: 7/8
  Reference: WBPaper00040589
    WBPaper00000975
    WBPaper00003985
    WBPaper00000699
    WBPaper00045317
  Method: WGS_Rose