WormBase Tree Display for Variation: WBVar02132676

WBVar02132676 Evidence: Paper_evidence: WBPaper00045317
  Name: Public_name: h7421
    Other_name (15)
    HGVSg: CHROMOSOME_III:g.10675232C>T
  Sequence_details: SMap: S_parent: Sequence: Y39A1A
    Flanking_sequences: TCTGCATCGAGTGCTCTGGAATCCACCGGAATCTGGGATC CATATCTCGAAGGTTCGAGGATTGGAGTTGGATCAGTGGC
    Mapping_target: CHROMOSOME_III
    Source_location: 200 CHROMOSOME_III 10675115 10675115
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00023691
    Laboratory: KR
    Analysis: WGS_Rose
    Status: Live
  Affects: Gene: WBGene00000566
    Transcript: Y39A1A.15e.3 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y39A1A.15e.3:c.1905C>T
        HGVSp: CE52029:p.Ser635=
        cDNA_position: 1956
        CDS_position: 1905
        Protein_position: 635
        Exon_number: 8/11
        Codon_change: tcC/tcT
        Amino_acid_change: S
      Y39A1A.15b.2 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y39A1A.15b.2:c.2139C>T
        HGVSp: CE19135:p.Ser713=
        cDNA_position: 2147
        CDS_position: 2139
        Protein_position: 713
        Exon_number: 10/13
        Codon_change: tcC/tcT
        Amino_acid_change: S
      Y39A1A.15b.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y39A1A.15b.1:c.2139C>T
        HGVSp: CE19135:p.Ser713=
        cDNA_position: 2245
        CDS_position: 2139
        Protein_position: 713
        Exon_number: 11/14
        Codon_change: tcC/tcT
        Amino_acid_change: S
      Y39A1A.15g.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y39A1A.15g.1:c.1284C>T
        HGVSp: CE52005:p.Ser428=
        cDNA_position: 1444
        CDS_position: 1284
        Protein_position: 428
        Exon_number: 4/7
        Codon_change: tcC/tcT
        Amino_acid_change: S
      Y39A1A.15f.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y39A1A.15f.1:c.1512C>T
        HGVSp: CE51984:p.Ser504=
        cDNA_position: 1898
        CDS_position: 1512
        Protein_position: 504
        Exon_number: 7/10
        Codon_change: tcC/tcT
        Amino_acid_change: S
      Y39A1A.15a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y39A1A.15a.1:c.2607C>T
        HGVSp: CE28116:p.Ser869=
        cDNA_position: 2659
        CDS_position: 2607
        Protein_position: 869
        Exon_number: 9/12
        Codon_change: tcC/tcT
        Amino_acid_change: S
      Y39A1A.15e.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y39A1A.15e.1:c.1905C>T
        HGVSp: CE52029:p.Ser635=
        cDNA_position: 2124
        CDS_position: 1905
        Protein_position: 635
        Exon_number: 10/13
        Codon_change: tcC/tcT
        Amino_acid_change: S
      Y39A1A.15c.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y39A1A.15c.1:c.1995C>T
        HGVSp: CE20232:p.Ser665=
        cDNA_position: 2033
        CDS_position: 1995
        Protein_position: 665
        Exon_number: 8/11
        Codon_change: tcC/tcT
        Amino_acid_change: S
      Y39A1A.15e.2 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y39A1A.15e.2:c.1905C>T
        HGVSp: CE52029:p.Ser635=
        cDNA_position: 2039
        CDS_position: 1905
        Protein_position: 635
        Exon_number: 9/12
        Codon_change: tcC/tcT
        Amino_acid_change: S
  Reference: WBPaper00040589
    WBPaper00000975
    WBPaper00003985
    WBPaper00000699
    WBPaper00045317
  Method: WGS_Rose