WormBase Tree Display for Variation: WBVar02132670

WBVar02132670 Evidence: Paper_evidence: WBPaper00045317
  Name: Public_name: h5964
    Other_name: Y39A1A.2b.1:c.279-465G>A
      Y39A1A.2d.1:c.*179+194G>A
      Y39A1A.2c.1:c.131-465G>A
      Y39A1A.2a.1:c.507+194G>A
    HGVSg: CHROMOSOME_III:g.10602512C>T
  Sequence_details: SMap: S_parent: Sequence: Y39A1A
    Flanking_sequences: TTTTATCGATACATTTTCCCACACTGAAAATTCTGAATTT TTGAAATTAAAATGACCTCCCCTGATTCTGAAGATATATG
    Mapping_target: CHROMOSOME_III
    Source_location: 200 CHROMOSOME_III 10602395 10602395
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00023685
    Laboratory: KR
    Analysis: WGS_Rose
    Status: Live
  Affects: Gene: WBGene00012642
    Transcript: Y39A1A.2a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39A1A.2a.1:c.507+194G>A
        Intron_number: 5/6
      Y39A1A.2d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39A1A.2d.1:c.*179+194G>A
        Intron_number: 5/5
      Y39A1A.2b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39A1A.2b.1:c.279-465G>A
        Intron_number: 4/5
      Y39A1A.2c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39A1A.2c.1:c.131-465G>A
        Intron_number: 2/2
  Reference: WBPaper00040589
    WBPaper00000975
    WBPaper00003985
    WBPaper00000699
    WBPaper00045317
  Method: WGS_Rose