WormBase Tree Display for Variation: WBVar02132156
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WBVar02132156 | Evidence | Paper_evidence | WBPaper00045317 | |||
---|---|---|---|---|---|---|
Name | Public_name | h13926 | ||||
Other_name | CE52511:p.Gln468= | |||||
C56G2.1e.1:c.1122G>A | ||||||
CE52470:p.Gln454= | ||||||
C56G2.1d.1:c.1404G>A | ||||||
C56G2.1a.1:c.1422G>A | ||||||
C56G2.1c.1:c.1362G>A | ||||||
CE52570:p.Gln374= | ||||||
CE24866:p.Gln474= | ||||||
HGVSg | CHROMOSOME_III:g.6358604G>A | |||||
Sequence_details | SMap | S_parent | Sequence | C56G2 | ||
Flanking_sequences | AACATCATGAGAACGAAGCTGGAGACGCTGCCCACGCTCA | ATTATCGAATCTCCACATCACGAGAATGCGAGCTACGAGA | ||||
Mapping_target | CHROMOSOME_III | |||||
Source_location | 200 | CHROMOSOME_III | 6358548 | 6358548 | ||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | Allele | |||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00023886 | |||||
Laboratory | KR | |||||
Analysis | WGS_Rose | |||||
Status | Live | |||||
Affects | Gene | WBGene00016977 | ||||
Transcript | C56G2.1d.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | |||||
HGVSc | C56G2.1d.1:c.1404G>A | |||||
HGVSp | CE52511:p.Gln468= | |||||
cDNA_position | 1404 | |||||
CDS_position | 1404 | |||||
Protein_position | 468 | |||||
Exon_number | 10/15 | |||||
Codon_change | caG/caA | |||||
Amino_acid_change | Q | |||||
C56G2.1c.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | C56G2.1c.1:c.1362G>A | |||||
HGVSp | CE52470:p.Gln454= | |||||
cDNA_position | 1362 | |||||
CDS_position | 1362 | |||||
Protein_position | 454 | |||||
Exon_number | 9/14 | |||||
Codon_change | caG/caA | |||||
Amino_acid_change | Q | |||||
C56G2.1a.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | C56G2.1a.1:c.1422G>A | |||||
HGVSp | CE24866:p.Gln474= | |||||
cDNA_position | 1520 | |||||
CDS_position | 1422 | |||||
Protein_position | 474 | |||||
Exon_number | 11/17 | |||||
Codon_change | caG/caA | |||||
Amino_acid_change | Q | |||||
C56G2.1e.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | C56G2.1e.1:c.1122G>A | |||||
HGVSp | CE52570:p.Gln374= | |||||
cDNA_position | 1122 | |||||
CDS_position | 1122 | |||||
Protein_position | 374 | |||||
Exon_number | 9/15 | |||||
Codon_change | caG/caA | |||||
Amino_acid_change | Q | |||||
Reference | WBPaper00040589 | |||||
WBPaper00000975 | ||||||
WBPaper00003985 | ||||||
WBPaper00000699 | ||||||
WBPaper00045317 | ||||||
Method | WGS_Rose |