WormBase Tree Display for Variation: WBVar02130048
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| WBVar02130048 | Evidence | Paper_evidence | WBPaper00045317 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | h12400 | ||||
| Other_name | F57F10.1c.1:c.509+96A>G | |||||
| F57F10.1a.1:c.716+96A>G | ||||||
| F57F10.5:n.60T>C | ||||||
| F57F10.1e.1:c.968+96A>G | ||||||
| F57F10.1d.1:c.473+96A>G | ||||||
| F57F10.1b.2:c.230+96A>G | ||||||
| F57F10.1b.1:c.230+96A>G | ||||||
| HGVSg | CHROMOSOME_II:g.6151762A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | F57F10 | ||
| Flanking_sequences | CATCATAAGGATAAGTCTGAGTTTGATGGGCAAACGAAAT | AAAGAGTGGGATAGAATATGAAAATGGGAGTTGGATGCCA | ||||
| Mapping_target | CHROMOSOME_II | |||||
| Source_location | 200 | CHROMOSOME_II | 6151719 | 6151719 | ||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | Allele | |||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00023780 | |||||
| Laboratory | KR | |||||
| Analysis | WGS_Rose | |||||
| Status | Live | |||||
| Affects | Gene | WBGene00019018 | ||||
| WBGene00200947 | ||||||
| Transcript | F57F10.5 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | F57F10.5:n.60T>C | |||||
| cDNA_position | 60 | |||||
| Exon_number | 1/1 | |||||
| F57F10.1d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F57F10.1d.1:c.473+96A>G | |||||
| Intron_number | 5/17 | |||||
| F57F10.1c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F57F10.1c.1:c.509+96A>G | |||||
| Intron_number | 5/17 | |||||
| F57F10.1a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F57F10.1a.1:c.716+96A>G | |||||
| Intron_number | 4/17 | |||||
| F57F10.1e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F57F10.1e.1:c.968+96A>G | |||||
| Intron_number | 4/17 | |||||
| F57F10.1b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F57F10.1b.1:c.230+96A>G | |||||
| Intron_number | 5/18 | |||||
| F57F10.1b.2 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F57F10.1b.2:c.230+96A>G | |||||
| Intron_number | 4/17 | |||||
| Reference | WBPaper00040589 | |||||
| WBPaper00000975 | ||||||
| WBPaper00003985 | ||||||
| WBPaper00000699 | ||||||
| WBPaper00045317 | ||||||
| Method | WGS_Rose |
