WormBase Tree Display for Variation: WBVar02125638
expand all nodes | collapse all nodes | view schema
| WBVar02125638 | Evidence | Paper_evidence | WBPaper00045008 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | zd152 | |||||||
| Other_name | CE40076:p.Arg65Ter | ||||||||
| F58E10.1b.1:c.193C>T | |||||||||
| CE30677:p.Arg50Ter | |||||||||
| F58E10.1a.1:c.148C>T | |||||||||
| HGVSg | CHROMOSOME_V:g.14000807G>A | ||||||||
| Sequence_details | SMap | S_parent | Sequence | F58E10 | |||||
| Flanking_sequences | gtcgccggtgtaggatcattcttcgcttat | gagttgcatcgaatcttctaggaaatcgat | |||||||
| Mapping_target | F58E10 | ||||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00045008 | ||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Laboratory | SK | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00305465 | |||||||
| WBGene00010259 | |||||||||
| Transcript | F58E10.8 | ||||||||
| F58E10.1a.1 | VEP_consequence | stop_gained | |||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | F58E10.1a.1:c.148C>T | ||||||||
| HGVSp | CE30677:p.Arg50Ter | ||||||||
| cDNA_position | 299 | ||||||||
| CDS_position | 148 | ||||||||
| Protein_position | 50 | ||||||||
| Exon_number | 3/15 | ||||||||
| Codon_change | Cga/Tga | ||||||||
| Amino_acid_change | R/* | ||||||||
| F58E10.1b.1 | VEP_consequence | stop_gained | |||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | F58E10.1b.1:c.193C>T | ||||||||
| HGVSp | CE40076:p.Arg65Ter | ||||||||
| cDNA_position | 193 | ||||||||
| CDS_position | 193 | ||||||||
| Protein_position | 65 | ||||||||
| Exon_number | 2/14 | ||||||||
| Codon_change | Cga/Tga | ||||||||
| Amino_acid_change | R/* | ||||||||
| Isolation | Mutagen | ENU | Paper_evidence | WBPaper00045008 | |||||
| Genetics | Interpolated_map_position | V | 5.89817 | ||||||
| Description | Phenotype | WBPhenotype:0000636 | Paper_evidence | WBPaper00045008 | |||||
| Curator_confirmed | WBPerson298 | ||||||||
| Remark | Axon degeneration phenotypes. PVQ and HSN axons spontaneously degenerate | Paper_evidence | WBPaper00045008 | ||||||
| Curator_confirmed | WBPerson298 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0006976 | PATO:0000460 | Paper_evidence | WBPaper00045008 | ||||
| Curator_confirmed | WBPerson298 | ||||||||
| WBbt:0006830 | PATO:0000460 | Paper_evidence | WBPaper00045008 | ||||||
| Curator_confirmed | WBPerson298 | ||||||||
| Reference | WBPaper00045008 | ||||||||
| Method | Substitution_allele |
