WormBase Tree Display for Variation: WBVar02088738
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WBVar02088738 | Name | Public_name | WBVar02088738 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00818563 | |||||||
F58D5.2a.1:c.357_363delinsACTTTTG | ||||||||
CE34487:p.GlyLeuLeuVal119= | ||||||||
F58D5.2b.2:c.-22_-16delinsACTTTTG | ||||||||
F58D5.2b.4:c.-22_-16delinsACTTTTG | ||||||||
F58D5.2b.3:c.-22_-16delinsACTTTTG | ||||||||
F58D5.2b.1:c.-22_-16delinsACTTTTG | ||||||||
HGVSg | CHROMOSOME_I:g.12066292_12066298delinsCAAAAGT | |||||||
Sequence_details | SMap | S_parent | Sequence | F58D5 | ||||
Flanking_sequences | ACAAAACACCCACATCAAGATGGCAGACAC | CCCACCGAAACGAGCACATACAGAAGAGCT | ||||||
Mapping_target | F58D5 | |||||||
Source_location | 225 | CHROMOSOME_I | 12066283 | 12066289 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Insertion | CAAAAGT | ||||||
Deletion | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00010242 | ||||||
Transcript | F58D5.2b.2 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | F58D5.2b.2:c.-22_-16delinsACTTTTG | |||||||
cDNA_position | 228-235 | |||||||
Exon_number | 2/5 | |||||||
F58D5.2b.3 | VEP_consequence | 5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F58D5.2b.3:c.-22_-16delinsACTTTTG | |||||||
cDNA_position | 510-517 | |||||||
Exon_number | 2/5 | |||||||
F58D5.2b.4 | VEP_consequence | 5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F58D5.2b.4:c.-22_-16delinsACTTTTG | |||||||
cDNA_position | 65-72 | |||||||
Exon_number | 1/4 | |||||||
F58D5.2b.1 | VEP_consequence | 5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F58D5.2b.1:c.-22_-16delinsACTTTTG | |||||||
cDNA_position | 205-212 | |||||||
Exon_number | 2/5 | |||||||
F58D5.2a.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | F58D5.2a.1:c.357_363delinsACTTTTG | |||||||
HGVSp | CE34487:p.GlyLeuLeuVal119= | |||||||
cDNA_position | 781-788 | |||||||
CDS_position | 357-364 | |||||||
Protein_position | 119-122 | |||||||
Exon_number | 4/6 | |||||||
Codon_change | ggCCTCCTTGtg/ggACTTTTGGtg | |||||||
Amino_acid_change | GLLV | |||||||
Method | WGS_Flibotte |