WormBase Tree Display for Variation: WBVar01999348
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WBVar01999348 | Name | Public_name | WBVar01999348 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00726789 | |||||||
Y55D5A.5c.1:c.5230-107_5230-106del | ||||||||
Y55D5A.5d.1:c.4843-107_4843-106del | ||||||||
Y55D5A.5f.1:c.2554-107_2554-106del | ||||||||
Y55D5A.5g.1:c.1462-107_1462-106del | ||||||||
Y55D5A.5e.1:c.4756-107_4756-106del | ||||||||
Y55D5A.5a.1:c.4984-107_4984-106del | ||||||||
HGVSg | CHROMOSOME_III:g.2998953_2998954del | |||||||
Sequence_details | SMap | S_parent | Sequence | Y55D5A | ||||
Flanking_sequences | GAAAAGATGATTTCATTACTTTAATCGAAA | TTTTTTTTTTCAATTTTTTTTTCAAATTTT | ||||||
Mapping_target | Y55D5A | |||||||
Source_location | 225 | CHROMOSOME_III | 2998945 | 2998946 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00006631 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00000898 | ||||||
Transcript | Y55D5A.5g.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y55D5A.5g.1:c.1462-107_1462-106del | |||||||
Intron_number | 1/3 | |||||||
Y55D5A.5e.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y55D5A.5e.1:c.4756-107_4756-106del | |||||||
Intron_number | 12/14 | |||||||
Y55D5A.5f.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y55D5A.5f.1:c.2554-107_2554-106del | |||||||
Intron_number | 5/7 | |||||||
Y55D5A.5a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y55D5A.5a.1:c.4984-107_4984-106del | |||||||
Intron_number | 15/18 | |||||||
Y55D5A.5c.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y55D5A.5c.1:c.5230-107_5230-106del | |||||||
Intron_number | 17/20 | |||||||
Y55D5A.5d.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y55D5A.5d.1:c.4843-107_4843-106del | |||||||
Intron_number | 13/15 | |||||||
Method | WGS_Flibotte |