WormBase Tree Display for Variation: WBVar01935660
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WBVar01935660 | Name | Public_name | WBVar01935660 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00655679 | |||||||
CE02972:p.Met71IlefsTer3 | ||||||||
C05D12.3c.3:c.*282+10_*282+16del | ||||||||
C05D12.3c.2:c.*1541_*1547del | ||||||||
C05D12.3c.1:c.*292_*298del | ||||||||
C05D12.4.1:c.211_217del | ||||||||
HGVSg | CHROMOSOME_II:g.11432094_11432100del | |||||||
Sequence_details | SMap | S_parent | Sequence | C05D12 | ||||
Flanking_sequences | GTAGAATTCTACAGACGCGCTGTAATGTTT | ATCAACTGATTGAAAAAGATGCAGTGATTG | ||||||
Mapping_target | C05D12 | |||||||
Source_location | 225 | CHROMOSOME_II | 11432030 | 11432036 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00007341 | ||||||
WBGene00014666 | ||||||||
Transcript | C05D12.4.1 | VEP_consequence | frameshift_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | C05D12.4.1:c.211_217del | |||||||
HGVSp | CE02972:p.Met71IlefsTer3 | |||||||
cDNA_position | 211-217 | |||||||
CDS_position | 211-217 | |||||||
Protein_position | 71-73 | |||||||
Exon_number | 1/1 | |||||||
Codon_change | ATGGAAAat/at | |||||||
Amino_acid_change | MEN/X | |||||||
C05D12.3c.1 | VEP_consequence | 3_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | C05D12.3c.1:c.*292_*298del | |||||||
cDNA_position | 3313-3319 | |||||||
Exon_number | 18/18 | |||||||
C05D12.3c.3 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | C05D12.3c.3:c.*282+10_*282+16del | |||||||
Intron_number | 17/17 | |||||||
C05D12.3c.2 | VEP_consequence | 3_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | C05D12.3c.2:c.*1541_*1547del | |||||||
cDNA_position | 4561-4567 | |||||||
Exon_number | 17/17 | |||||||
Method | WGS_Flibotte |