WormBase Tree Display for Variation: WBVar01811209
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WBVar01811209 | Name | Public_name | WBVar01811209 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00522407 | |||||||
T19C9.5.1:c.-1301A>T | ||||||||
T19C9.2.1:c.342T>A | ||||||||
CE16419:p.Leu114= | ||||||||
HGVSg | CHROMOSOME_V:g.17225878A>T | |||||||
Sequence_details | SMap | S_parent | Sequence | T19C9 | ||||
Flanking_sequences | AAAACACTTACCTGCAAGCATTGCTCCTCC | AGAACTGCCTGATAAACAAATGGTACACCC | ||||||
Mapping_target | T19C9 | |||||||
Source_location | 225 | CHROMOSOME_V | 17225853 | 17225853 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | A | T | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00005331 | ||||||
WBGene00011841 | ||||||||
Transcript | T19C9.5.1 | VEP_consequence | 5_prime_UTR_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | T19C9.5.1:c.-1301A>T | |||||||
cDNA_position | 190 | |||||||
Exon_number | 1/6 | |||||||
T19C9.2.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | T19C9.2.1:c.342T>A | |||||||
HGVSp | CE16419:p.Leu114= | |||||||
cDNA_position | 342 | |||||||
CDS_position | 342 | |||||||
Protein_position | 114 | |||||||
Exon_number | 1/2 | |||||||
Codon_change | ctT/ctA | |||||||
Amino_acid_change | L | |||||||
Method | WGS_Flibotte |