WormBase Tree Display for Variation: WBVar01561594
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WBVar01561594 | Name | Public_name | WBVar01561594 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00142184 | |||||||
Y48C3A.5b.1:c.639+4350G>A | ||||||||
CE22135:p.Val50= | ||||||||
Y48C3A.5a.1:c.639+4350G>A | ||||||||
CE54249:p.Val53= | ||||||||
Y48C3A.4b.1:c.159C>T | ||||||||
Y48C3A.4a.1:c.150C>T | ||||||||
Y48C3A.5d.1:c.504+4350G>A | ||||||||
HGVSg | CHROMOSOME_II:g.13284118G>A | |||||||
Sequence_details | SMap | S_parent | Sequence | Y48C3A | ||||
Flanking_sequences | GCTCTGTACGGGTGGCGGTGTCAACGTATT | ACCGTCGGCTTGATCGGCCATACAGTGGGT | ||||||
Mapping_target | Y48C3A | |||||||
Source_location | 225 | CHROMOSOME_II | 13284048 | 13284048 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | G | A | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00012989 | ||||||
WBGene00012988 | ||||||||
Transcript | Y48C3A.5d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y48C3A.5d.1:c.504+4350G>A | |||||||
Intron_number | 4/9 | |||||||
Y48C3A.4b.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | Y48C3A.4b.1:c.159C>T | |||||||
HGVSp | CE54249:p.Val53= | |||||||
cDNA_position | 197 | |||||||
CDS_position | 159 | |||||||
Protein_position | 53 | |||||||
Exon_number | 3/7 | |||||||
Codon_change | gtC/gtT | |||||||
Amino_acid_change | V | |||||||
Y48C3A.5b.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y48C3A.5b.1:c.639+4350G>A | |||||||
Intron_number | 4/11 | |||||||
Y48C3A.5a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y48C3A.5a.1:c.639+4350G>A | |||||||
Intron_number | 4/10 | |||||||
Y48C3A.4a.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | Y48C3A.4a.1:c.150C>T | |||||||
HGVSp | CE22135:p.Val50= | |||||||
cDNA_position | 197 | |||||||
CDS_position | 150 | |||||||
Protein_position | 50 | |||||||
Exon_number | 3/7 | |||||||
Codon_change | gtC/gtT | |||||||
Amino_acid_change | V | |||||||
Method | WGS_Flibotte |