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WormBase Tree Display for Variation: WBVar01561594

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Name Class

WBVar01561594NamePublic_nameWBVar01561594
Other_namecewivar00142184
Y48C3A.5b.1:c.639+4350G>A
CE22135:p.Val50=
Y48C3A.5a.1:c.639+4350G>A
CE54249:p.Val53=
Y48C3A.4b.1:c.159C>T
Y48C3A.4a.1:c.150C>T
Y48C3A.5d.1:c.504+4350G>A
HGVSgCHROMOSOME_II:g.13284118G>A
Sequence_detailsSMapS_parentSequenceY48C3A
Flanking_sequencesGCTCTGTACGGGTGGCGGTGTCAACGTATTACCGTCGGCTTGATCGGCCATACAGTGGGT
Mapping_targetY48C3A
Source_location225CHROMOSOME_II1328404813284048From_analysisMillion_mutation_project_reanalysis
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00023072From_analysisMillion_mutation_project_reanalysis
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00012989
WBGene00012988
TranscriptY48C3A.5d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.5d.1:c.504+4350G>A
Intron_number4/9
Y48C3A.4b.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY48C3A.4b.1:c.159C>T
HGVSpCE54249:p.Val53=
cDNA_position197
CDS_position159
Protein_position53
Exon_number3/7
Codon_changegtC/gtT
Amino_acid_changeV
Y48C3A.5b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.5b.1:c.639+4350G>A
Intron_number4/11
Y48C3A.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.5a.1:c.639+4350G>A
Intron_number4/10
Y48C3A.4a.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY48C3A.4a.1:c.150C>T
HGVSpCE22135:p.Val50=
cDNA_position197
CDS_position150
Protein_position50
Exon_number3/7
Codon_changegtC/gtT
Amino_acid_changeV
MethodWGS_Flibotte