WormBase Tree Display for Variation: WBVar01474423

WBVar01474423 Name: Public_name: tm6459
    Other_name: C30A5.7a.1:c.257_376-137del
      C30A5.7b.1:c.425_544-137del
    HGVSg: CHROMOSOME_III:g.8213918_8214338del
  Sequence_details: SMap: S_parent: Sequence: C30A5
    Flanking_sequences: gtatttaaaaacataattaaaaatgtacat tagaactggcaatggatgttgttgaaaatg
    Mapping_target: C30A5
    Source_location: 7 CHROMOSOME_III 8213917 8214339 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm6459_external
      tm6459_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6459
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006818
    Transcript: C30A5.7b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C30A5.7b.1:c.425_544-137del
        cDNA_position: 465-?
        CDS_position: 425-?
        Protein_position: 142-?
        Intron_number: 4/7
        Exon_number: 4/8
      C30A5.7a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C30A5.7a.1:c.257_376-137del
        cDNA_position: 257-?
        CDS_position: 257-?
        Protein_position: 86-?
        Intron_number: 2/5
        Exon_number: 2/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 10995/10996-11416/11417 (421 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele