WormBase Tree Display for Variation: WBVar01431871
expand all nodes | collapse all nodes | view schema
WBVar01431871 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01431871 | ||||
Other_name | K04F10.4j.1:c.1972-1861T>A | |||||
K04F10.4d.1:c.1971+2491T>A | ||||||
K04F10.4c.1:c.1971+2491T>A | ||||||
K04F10.4i.1:c.1972-1547T>A | ||||||
K04F10.4h.1:c.1972-530T>A | ||||||
K04F10.4b.1:c.1971+2491T>A | ||||||
K04F10.4d.2:c.1971+2491T>A | ||||||
K04F10.4a.1:c.1972-245T>A | ||||||
HGVSg | CHROMOSOME_I:g.6348047T>A | |||||
Sequence_details | SMap | S_parent | Sequence | K04F10 | ||
Flanking_sequences | CGTCGTCGTCTTTTTAAATTGGTTCTACGG | GTTTTTAATTGTTATTTCACTTGCATGTCG | ||||
Mapping_target | K04F10 | |||||
Type_of_mutation | Substitution | t | a | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00031279 | From_analysis | WGS_Andersen | |||
WBStrain00031284 | From_analysis | WGS_Andersen | ||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | WGS_Andersen | |||||
DB_info | Database | dbSNP_rs | rs | 193319934 | ||
dbSNP_ss | ss | 295495851 | ||||
Status | Live | |||||
Affects | Gene | WBGene00000254 | ||||
Transcript | K04F10.4j.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | K04F10.4j.1:c.1972-1861T>A | |||||
Intron_number | 13/14 | |||||
K04F10.4d.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | K04F10.4d.1:c.1971+2491T>A | |||||
Intron_number | 13/19 | |||||
K04F10.4h.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | K04F10.4h.1:c.1972-530T>A | |||||
Intron_number | 13/14 | |||||
K04F10.4d.2 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | K04F10.4d.2:c.1971+2491T>A | |||||
Intron_number | 12/18 | |||||
K04F10.4i.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | K04F10.4i.1:c.1972-1547T>A | |||||
Intron_number | 11/11 | |||||
K04F10.4b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | K04F10.4b.1:c.1971+2491T>A | |||||
Intron_number | 11/12 | |||||
K04F10.4c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | K04F10.4c.1:c.1971+2491T>A | |||||
Intron_number | 13/16 | |||||
K04F10.4a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | K04F10.4a.1:c.1972-245T>A | |||||
Intron_number | 13/14 | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |