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WormBase Tree Display for Variation: WBVar01396400

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Name Class

WBVar01396400EvidencePaper_evidenceWBPaper00037807
NamePublic_nameWBVar01396400
Other_namecewivar00674261
Y55D5A.5d.1:c.3312-1017del
Y55D5A.5e.1:c.3225-1017del
Y55D5A.5c.1:c.3699-1017del
Y55D5A.5a.1:c.3453-1017del
Y55D5A.5f.1:c.1023-1017del
HGVSgCHROMOSOME_III:g.3002399del
Sequence_detailsSMapS_parentSequenceY55D5A
Flanking_sequencesTTTTCTCAAACAATTTCTTTTTGGAACTAATTTATCAACTATTCATCAGCAAAAAAAAACGGATAGAAATCGGTGAAAAGTTATTCAATTTTGTATTTTT
Mapping_targetY55D5A
Type_of_mutationDeletionAPaper_evidenceWBPaper00037807
SeqStatusSequenced
Variation_typeSNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (15)
LaboratoryAX
AnalysisWGS_De_Bono
Million_mutation_project_reanalysis
DB_infoDatabasedbSNP_ssss539115555
StatusLive
AffectsGeneWBGene00000898
TranscriptY55D5A.5e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5e.1:c.3225-1017del
Intron_number11/14
Y55D5A.5f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5f.1:c.1023-1017del
Intron_number4/7
Y55D5A.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5a.1:c.3453-1017del
Intron_number14/18
Y55D5A.5c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5c.1:c.3699-1017del
Intron_number16/20
Y55D5A.5d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5d.1:c.3312-1017del
Intron_number12/15
ReferenceWBPaper00037807
MethodWGS_De_Bono