WormBase Tree Display for Variation: WBVar01396400
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WBVar01396400 | Evidence | Paper_evidence | WBPaper00037807 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01396400 | ||||
Other_name | cewivar00674261 | |||||
Y55D5A.5d.1:c.3312-1017del | ||||||
Y55D5A.5e.1:c.3225-1017del | ||||||
Y55D5A.5c.1:c.3699-1017del | ||||||
Y55D5A.5a.1:c.3453-1017del | ||||||
Y55D5A.5f.1:c.1023-1017del | ||||||
HGVSg | CHROMOSOME_III:g.3002399del | |||||
Sequence_details | SMap | S_parent | Sequence | Y55D5A | ||
Flanking_sequences | TTTTCTCAAACAATTTCTTTTTGGAACTAATTTATCAACTATTCATCAGC | AAAAAAAAACGGATAGAAATCGGTGAAAAGTTATTCAATTTTGTATTTTT | ||||
Mapping_target | Y55D5A | |||||
Type_of_mutation | Deletion | A | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain (15) | ||||||
Laboratory | AX | |||||
Analysis | WGS_De_Bono | |||||
Million_mutation_project_reanalysis | ||||||
DB_info | Database | dbSNP_ss | ss | 539115555 | ||
Status | Live | |||||
Affects | Gene | WBGene00000898 | ||||
Transcript | Y55D5A.5e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | Y55D5A.5e.1:c.3225-1017del | |||||
Intron_number | 11/14 | |||||
Y55D5A.5f.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y55D5A.5f.1:c.1023-1017del | |||||
Intron_number | 4/7 | |||||
Y55D5A.5a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y55D5A.5a.1:c.3453-1017del | |||||
Intron_number | 14/18 | |||||
Y55D5A.5c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y55D5A.5c.1:c.3699-1017del | |||||
Intron_number | 16/20 | |||||
Y55D5A.5d.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y55D5A.5d.1:c.3312-1017del | |||||
Intron_number | 12/15 | |||||
Reference | WBPaper00037807 | |||||
Method | WGS_De_Bono |