WormBase Tree Display for Variation: WBVar01329482
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| WBVar01329482 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01329482 | |||||
| Other_name | cewivar00486913 | ||||||
| CE46852:p.Ala797= | |||||||
| CE50158:p.Ala721= | |||||||
| Y55D5A.5e.1:c.2163G>A | |||||||
| Y55D5A.5d.1:c.2250G>A | |||||||
| CE50312:p.Ala750= | |||||||
| Y55D5A.5a.1:c.2391G>A | |||||||
| CE50204:p.Ala797= | |||||||
| Y55D5A.5c.1:c.2391G>A | |||||||
| HGVSg | CHROMOSOME_III:g.3010508C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | |||
| Flanking_sequences | TCACGCCACATAATTGTGTAATGCGTGAGGTCTCCGTTCGGTTGGAGCGG | GCTTCCCACGTAATACTGTAATACATATAATGTGATGTAATGCATAGTTT | |||||
| Mapping_target | Y55D5A | ||||||
| Type_of_mutation | Substitution | c | T | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_De_Bono | |||||||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539184814 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00000898 | |||||
| Transcript | Y55D5A.5e.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | ||||||
| HGVSc | Y55D5A.5e.1:c.2163G>A | ||||||
| HGVSp | CE50158:p.Ala721= | ||||||
| cDNA_position | 2163 | ||||||
| CDS_position | 2163 | ||||||
| Protein_position | 721 | ||||||
| Exon_number | 8/15 | ||||||
| Codon_change | gcG/gcA | ||||||
| Amino_acid_change | A | ||||||
| Y55D5A.5a.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | Y55D5A.5a.1:c.2391G>A | ||||||
| HGVSp | CE46852:p.Ala797= | ||||||
| cDNA_position | 2489 | ||||||
| CDS_position | 2391 | ||||||
| Protein_position | 797 | ||||||
| Exon_number | 11/19 | ||||||
| Codon_change | gcG/gcA | ||||||
| Amino_acid_change | A | ||||||
| Y55D5A.5c.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | Y55D5A.5c.1:c.2391G>A | ||||||
| HGVSp | CE50204:p.Ala797= | ||||||
| cDNA_position | 2554 | ||||||
| CDS_position | 2391 | ||||||
| Protein_position | 797 | ||||||
| Exon_number | 12/21 | ||||||
| Codon_change | gcG/gcA | ||||||
| Amino_acid_change | A | ||||||
| Y55D5A.5d.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | Y55D5A.5d.1:c.2250G>A | ||||||
| HGVSp | CE50312:p.Ala750= | ||||||
| cDNA_position | 2250 | ||||||
| CDS_position | 2250 | ||||||
| Protein_position | 750 | ||||||
| Exon_number | 9/16 | ||||||
| Codon_change | gcG/gcA | ||||||
| Amino_acid_change | A | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
