WormBase Tree Display for Variation: WBVar01329468
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WBVar01329468 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01329468 | |||||
Other_name | cewivar00104674 | ||||||
Y55D5A.5e.1:c.2890-315A>G | |||||||
Y55D5A.5d.1:c.2977-315A>G | |||||||
Y55D5A.5c.1:c.3364-315A>G | |||||||
Y55D5A.5f.1:c.688-315A>G | |||||||
Y55D5A.5a.1:c.3118-315A>G | |||||||
HGVSg | CHROMOSOME_III:g.3005215T>C | ||||||
Sequence_details | SMap | S_parent | Sequence | Y55D5A | |||
Flanking_sequences | GCCCATTTTCAGCTAAAATCAAAACTTTTTCCAACTTCTCGGTGTCGCAA | GTCTGGAACCTAATTTTTATTTATTTATCACTTTTTATTAAATATTGTGG | |||||
Mapping_target | Y55D5A | ||||||
Type_of_mutation | Substitution | t | C | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain (22) | |||||||
Laboratory | AX | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
DB_info | Database | dbSNP_ss | ss | 539184803 | |||
Status | Live | ||||||
Affects | Gene | WBGene00000898 | |||||
Transcript | Y55D5A.5e.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5e.1:c.2890-315A>G | ||||||
Intron_number | 10/14 | ||||||
Y55D5A.5f.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5f.1:c.688-315A>G | ||||||
Intron_number | 3/7 | ||||||
Y55D5A.5a.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5a.1:c.3118-315A>G | ||||||
Intron_number | 13/18 | ||||||
Y55D5A.5c.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5c.1:c.3364-315A>G | ||||||
Intron_number | 15/20 | ||||||
Y55D5A.5d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y55D5A.5d.1:c.2977-315A>G | ||||||
Intron_number | 11/15 | ||||||
Reference | WBPaper00037807 | ||||||
Method | WGS_De_Bono |