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WormBase Tree Display for Variation: WBVar01329468

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Name Class

WBVar01329468EvidencePaper_evidenceWBPaper00037807
NamePublic_nameWBVar01329468
Other_namecewivar00104674
Y55D5A.5e.1:c.2890-315A>G
Y55D5A.5d.1:c.2977-315A>G
Y55D5A.5c.1:c.3364-315A>G
Y55D5A.5f.1:c.688-315A>G
Y55D5A.5a.1:c.3118-315A>G
HGVSgCHROMOSOME_III:g.3005215T>C
Sequence_detailsSMapS_parentSequenceY55D5A
Flanking_sequencesGCCCATTTTCAGCTAAAATCAAAACTTTTTCCAACTTCTCGGTGTCGCAAGTCTGGAACCTAATTTTTATTTATTTATCACTTTTTATTAAATATTGTGG
Mapping_targetY55D5A
Type_of_mutationSubstitutiontCPaper_evidenceWBPaper00037807
SeqStatusSequenced
Variation_typeSNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (22)
LaboratoryAX
AnalysisWGS_De_Bono
Million_mutation_project_reanalysis
DB_infoDatabasedbSNP_ssss539184803
StatusLive
AffectsGeneWBGene00000898
TranscriptY55D5A.5e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5e.1:c.2890-315A>G
Intron_number10/14
Y55D5A.5f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5f.1:c.688-315A>G
Intron_number3/7
Y55D5A.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5a.1:c.3118-315A>G
Intron_number13/18
Y55D5A.5c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5c.1:c.3364-315A>G
Intron_number15/20
Y55D5A.5d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5d.1:c.2977-315A>G
Intron_number11/15
ReferenceWBPaper00037807
MethodWGS_De_Bono