WormBase Tree Display for Variation: WBVar01280399
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| WBVar01280399 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01280399 | |||||
| Other_name | cewivar00278320 | ||||||
| C45E1.1a.2:c.220+543A>G | |||||||
| C45E1.1b.1:c.146-743A>G | |||||||
| C45E1.1c.1:c.238+543A>G | |||||||
| C45E1.1a.1:c.220+543A>G | |||||||
| HGVSg | CHROMOSOME_I:g.3106775A>G | ||||||
| Sequence_details | SMap | S_parent | Sequence | C45E1 | |||
| Flanking_sequences | TACTACTTCAGAGGGACTGATAAATTATTTGAAAAATTTTGCATTTTTTT | TGAATAGTGAGAGGTAAAGAAAATCGGACATCCTTAAAAAATGTTTAAAA | |||||
| Mapping_target | C45E1 | ||||||
| Type_of_mutation | Substitution | a | G | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||||
| WGS_De_Bono | |||||||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539140639 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00003654 | |||||
| Transcript | C45E1.1b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | C45E1.1b.1:c.146-743A>G | ||||||
| Intron_number | 1/6 | ||||||
| C45E1.1c.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | C45E1.1c.1:c.238+543A>G | ||||||
| Intron_number | 3/8 | ||||||
| C45E1.1a.2 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | C45E1.1a.2:c.220+543A>G | ||||||
| Intron_number | 4/10 | ||||||
| C45E1.1a.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | C45E1.1a.1:c.220+543A>G | ||||||
| Intron_number | 3/9 | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
