WormBase Tree Display for Variation: WBVar01276498
expand all nodes | collapse all nodes | view schema
| WBVar01276498 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01276498 | |||||
| Other_name | cewivar00255782 | ||||||
| CE16419:p.Tyr9= | |||||||
| T19C9.2.1:c.27C>T | |||||||
| T19C9.5.1:c.-986G>A | |||||||
| HGVSg | CHROMOSOME_V:g.17226193G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | T19C9 | |||
| Flanking_sequences | CACGTGGCAAGAATGTTATAGGGTAGATTACATTTTGAGTAATTCGTTGC | TAATACTGCTCTAACGCTGTGGGCATAGTTTAGACGTTAATGGAAAATTA | |||||
| Mapping_target | T19C9 | ||||||
| Type_of_mutation | Substitution | g | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539110791 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00005331 | |||||
| WBGene00011841 | |||||||
| Transcript | T19C9.5.1 | VEP_consequence | 5_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T19C9.5.1:c.-986G>A | ||||||
| cDNA_position | 505 | ||||||
| Exon_number | 1/6 | ||||||
| T19C9.2.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | T19C9.2.1:c.27C>T | ||||||
| HGVSp | CE16419:p.Tyr9= | ||||||
| cDNA_position | 27 | ||||||
| CDS_position | 27 | ||||||
| Protein_position | 9 | ||||||
| Exon_number | 1/2 | ||||||
| Codon_change | taC/taT | ||||||
| Amino_acid_change | Y | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
