WormBase Tree Display for Variation: WBVar01269562
expand all nodes | collapse all nodes | view schema
| WBVar01269562 | Evidence | Paper_evidence | WBPaper00037807 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01269562 | ||||
| Other_name | cewivar00658245 | |||||
| Y46E12BL.2a.2:c.3794+338del | ||||||
| Y46E12BL.2a.1:c.3794+338del | ||||||
| HGVSg | CHROMOSOME_II:g.15243412del | |||||
| Sequence_details | SMap | S_parent | Sequence | Y46E12BL | ||
| Flanking_sequences | GCCAATGGAACAAAAATCGATTTTTCGATGAATTTTGAGATTTTTTTCCG | AAAAAAAAATGCTTGTCATCACTTTTTTTCGAGCTGGAATAGGCTTGAAA | ||||
| Mapping_target | Y46E12BL | |||||
| Type_of_mutation | Deletion | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_De_Bono | ||||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | ||||
| Laboratory | AX | |||||
| Analysis | WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | ||||||
| DB_info | Database | dbSNP_ss | ss | 539008593 | ||
| Status | Live | |||||
| Affects | Gene | WBGene00021595 | ||||
| Transcript | Y46E12BL.2a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y46E12BL.2a.2:c.3794+338del | |||||
| Intron_number | 10/11 | |||||
| Y46E12BL.2a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y46E12BL.2a.1:c.3794+338del | |||||
| Intron_number | 9/10 | |||||
| Reference | WBPaper00037807 | |||||
| Method | WGS_De_Bono |
