WormBase Tree Display for Variation: WBVar01260932
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| WBVar01260932 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01260932 | |||||
| Other_name | cewivar00386350 | ||||||
| Y55D5A.5c.1:c.5229+145T>C | |||||||
| Y55D5A.5e.1:c.4755+145T>C | |||||||
| Y55D5A.5a.1:c.4983+145T>C | |||||||
| Y55D5A.5f.1:c.2553+145T>C | |||||||
| Y55D5A.5g.1:c.1461+145T>C | |||||||
| Y55D5A.5d.1:c.4842+145T>C | |||||||
| HGVSg | CHROMOSOME_III:g.2999707A>G | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | |||
| Flanking_sequences | TGCCGAAAAAAATTCTGACAATTTCTGCGTTTTTCTCTCGAAAAGTCGGA | CAAACCGGCAAAAAATGAAATTTTTTTTTTTTGGTTTTTTTCCGGCAAAA | |||||
| Mapping_target | Y55D5A | ||||||
| Type_of_mutation | Substitution | a | G | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00006642 | From_analysis | WGS_De_Bono | ||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539096782 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00000898 | |||||
| Transcript | Y55D5A.5g.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y55D5A.5g.1:c.1461+145T>C | ||||||
| Intron_number | 1/3 | ||||||
| Y55D5A.5e.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y55D5A.5e.1:c.4755+145T>C | ||||||
| Intron_number | 12/14 | ||||||
| Y55D5A.5f.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y55D5A.5f.1:c.2553+145T>C | ||||||
| Intron_number | 5/7 | ||||||
| Y55D5A.5a.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y55D5A.5a.1:c.4983+145T>C | ||||||
| Intron_number | 15/18 | ||||||
| Y55D5A.5c.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y55D5A.5c.1:c.5229+145T>C | ||||||
| Intron_number | 17/20 | ||||||
| Y55D5A.5d.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y55D5A.5d.1:c.4842+145T>C | ||||||
| Intron_number | 13/15 | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
