WormBase Tree Display for Variation: WBVar00590639
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WBVar00590639 | Evidence | Paper_evidence | WBPaper00038208 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00590639 | |||
Other_name | haw170774 | ||||
cewivar00243752 | |||||
CE32404:p.Ser154= | |||||
F35E12.9a.1:c.462T>C | |||||
CE45223:p.Ser176= | |||||
F35E12.9b.1:c.642T>C | |||||
F35E12.9c.1:c.528T>C | |||||
CE38514:p.Ser214= | |||||
HGVSg | CHROMOSOME_V:g.13742830A>G | ||||
Sequence_details | SMap | S_parent | Sequence | F35E12 | |
Flanking_sequences | GTTGAGCAATCGACGCAGATAAATGTATAGAGACCACCGTTTGTAGCCAG | GAAGTCATATTTCCAGATGCGGTTGTTCCTTTCGATGTCATTAAAACTGT | |||
Mapping_target | F35E12 | ||||
Type_of_mutation | Substitution | a | g | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WGS_Yanai | |||||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson4037 | ||||
Analysis | WGS_Yanai | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00009433 | |||
Transcript | F35E12.9c.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F35E12.9c.1:c.528T>C | ||||
HGVSp | CE45223:p.Ser176= | ||||
cDNA_position | 528 | ||||
CDS_position | 528 | ||||
Protein_position | 176 | ||||
Exon_number | 4/6 | ||||
Codon_change | tcT/tcC | ||||
Amino_acid_change | S | ||||
F35E12.9a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F35E12.9a.1:c.462T>C | ||||
HGVSp | CE32404:p.Ser154= | ||||
cDNA_position | 711 | ||||
CDS_position | 462 | ||||
Protein_position | 154 | ||||
Exon_number | 4/6 | ||||
Codon_change | tcT/tcC | ||||
Amino_acid_change | S | ||||
F35E12.9b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F35E12.9b.1:c.642T>C | ||||
HGVSp | CE38514:p.Ser214= | ||||
cDNA_position | 795 | ||||
CDS_position | 642 | ||||
Protein_position | 214 | ||||
Exon_number | 6/9 | ||||
Codon_change | tcT/tcC | ||||
Amino_acid_change | S | ||||
Reference | WBPaper00038208 | ||||
Method | WGS_Yanai |