WormBase Tree Display for Variation: WBVar00540250
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| WBVar00540250 | Name | Public_name | WBVar00540250 | ||
|---|---|---|---|---|---|
| Other_name | haw120385 | ||||
| cewivar00171391 | |||||
| F58D5.2b.4:c.18G>A | |||||
| F58D5.2a.1:c.396G>A | |||||
| F58D5.2b.3:c.18G>A | |||||
| CE34487:p.Ala132= | |||||
| F58D5.2b.2:c.18G>A | |||||
| F58D5.2b.1:c.18G>A | |||||
| CE34488:p.Ala6= | |||||
| HGVSg | CHROMOSOME_I:g.12066259C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F58D5 | |
| Flanking_sequences | GCCAGTGCTGGCATCGTAGCCCATTCGGGATTCATTTCAGCCCAATGAGC | GCACAAAACACCCACATCAAGATGGCAGACACAAGGAGGCCCACCGAAAC | |||
| Mapping_target | F58D5 | ||||
| Type_of_mutation | Substitution | c | t | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||
| Person | WBPerson4037 | ||||
| Analysis | WGS_Yanai | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01350783 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00010242 | |||
| Transcript | F58D5.2b.2 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F58D5.2b.2:c.18G>A | ||||
| HGVSp | CE34488:p.Ala6= | ||||
| cDNA_position | 267 | ||||
| CDS_position | 18 | ||||
| Protein_position | 6 | ||||
| Exon_number | 3/5 | ||||
| Codon_change | gcG/gcA | ||||
| Amino_acid_change | A | ||||
| F58D5.2b.3 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F58D5.2b.3:c.18G>A | ||||
| HGVSp | CE34488:p.Ala6= | ||||
| cDNA_position | 549 | ||||
| CDS_position | 18 | ||||
| Protein_position | 6 | ||||
| Exon_number | 3/5 | ||||
| Codon_change | gcG/gcA | ||||
| Amino_acid_change | A | ||||
| F58D5.2b.4 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F58D5.2b.4:c.18G>A | ||||
| HGVSp | CE34488:p.Ala6= | ||||
| cDNA_position | 104 | ||||
| CDS_position | 18 | ||||
| Protein_position | 6 | ||||
| Exon_number | 2/4 | ||||
| Codon_change | gcG/gcA | ||||
| Amino_acid_change | A | ||||
| F58D5.2b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F58D5.2b.1:c.18G>A | ||||
| HGVSp | CE34488:p.Ala6= | ||||
| cDNA_position | 244 | ||||
| CDS_position | 18 | ||||
| Protein_position | 6 | ||||
| Exon_number | 3/5 | ||||
| Codon_change | gcG/gcA | ||||
| Amino_acid_change | A | ||||
| F58D5.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F58D5.2a.1:c.396G>A | ||||
| HGVSp | CE34487:p.Ala132= | ||||
| cDNA_position | 820 | ||||
| CDS_position | 396 | ||||
| Protein_position | 132 | ||||
| Exon_number | 4/6 | ||||
| Codon_change | gcG/gcA | ||||
| Amino_acid_change | A | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Yanai |
