WormBase Tree Display for Variation: WBVar00323156
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| WBVar00323156 | Evidence | Paper_evidence | WBPaper00031335 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | nDf47 | |||||||
| HGVSg | CHROMOSOME_X:g.2368798_2369122del | ||||||||
| Sequence_details | SMap | S_parent | Sequence | T24D8 | |||||
| Flanking_sequences | TGAGAGTCCCACACACGACTGGACTTCCAT | CACGTTTTTCAACCAAATGCTATGGCCTTT | |||||||
| Mapping_target | T24D8 | ||||||||
| Type_of_mutation | Deletion | ||||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00027423 | ||||||||
| WBStrain00027574 | |||||||||
| Laboratory | MT | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00201404 | |||||||
| WBGene00202246 | |||||||||
| WBGene00003301 | |||||||||
| WBGene00003302 | |||||||||
| Transcript | T24D8.7 | ||||||||
| T24D8.16 | VEP_consequence | transcript_ablation | |||||||
| VEP_impact | HIGH | ||||||||
| cDNA_position | 1-? | ||||||||
| Exon_number | 1/1 | ||||||||
| T24D8.14 | VEP_consequence | transcript_ablation | |||||||
| VEP_impact | HIGH | ||||||||
| Exon_number | 1/1 | ||||||||
| T24D8.9 | |||||||||
| Genetics | Interpolated_map_position | X | -15.5961 | ||||||
| Description | Phenotype_not_observed | WBPhenotype:0000006 | Paper_evidence | WBPaper00031335 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | non-Egl | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0000207 | Paper_evidence | WBPaper00031335 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | Defecation cycle is normal | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0000634 | Paper_evidence | WBPaper00031335 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | Pumping is normal | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0000637 | Paper_evidence | WBPaper00031335 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | No defects in dauer formation | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0000643 | Paper_evidence | WBPaper00031335 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | non-Unc | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0001233 | Paper_evidence | WBPaper00031335 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | Cell number and nuclear staining is normal | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_assay | Treatment | DAPI staining | Paper_evidence | WBPaper00031335 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0002535 | Paper_evidence | WBPaper00031335 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | non-Dyf | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0005666 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBbt:0005667 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBbt:0005668 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBbt:0005665 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBbt:0005661 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBbt:0007807 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBbt:0007808 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_assay | Treatment | DiO staining | Paper_evidence | WBPaper00031335 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Reference | WBPaper00031335 | ||||||||
| Method | Deletion_allele |
