WormBase Tree Display for Variation: WBVar00313699
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WBVar00313699 | Evidence | Paper_evidence | WBPaper00036201 | ||
---|---|---|---|---|---|
Name | Public_name | otn16878 | |||
Other_name | OH9305_159750 | ||||
T04C10.11.1:c.142-7T>A | |||||
T04C10.11.2:c.142-7T>A | |||||
T04C10.4.1:c.-71T>A | |||||
HGVSg | CHROMOSOME_X:g.14810612A>T | ||||
Sequence_details | SMap | S_parent | Sequence | T04C10 | |
Flanking_sequences | CGTATGCATGACCCGTAGGCTCAACAAACACAGCACGTGATTTCCTGGAA | GGATCATTGTTTAAACTAATTATTAATCAATTAAAAGTTAAATGAACTTA | |||
Mapping_target | T04C10 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00029567 | ||||
Laboratory | OTN | ||||
Analysis | WGS_Hobert | ||||
Status | Live | ||||
Affects | Gene | WBGene00303075 | |||
WBGene00000221 | |||||
Transcript | T04C10.11.1 | VEP_consequence | splice_region_variant,intron_variant | ||
VEP_impact | LOW | ||||
HGVSc | T04C10.11.1:c.142-7T>A | ||||
Intron_number | 2/4 | ||||
T04C10.4.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T04C10.4.1:c.-71T>A | ||||
cDNA_position | 192 | ||||
Exon_number | 1/5 | ||||
T04C10.11.2 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | T04C10.11.2:c.142-7T>A | ||||
Intron_number | 2/3 | ||||
Genetics | Map | X | |||
Reference | WBPaper00036201 | ||||
Method | WGS_Hobert |