WormBase Tree Display for Variation: WBVar00296369

WBVar00296369 Name: Public_name: tm4774
    Other_name: Y54E10A.4b.1:c.728-32_1054del
      Y54E10A.4a.1:c.86-32_412del
      Y54E10A.4a.2:c.86-32_412del
    HGVSg: CHROMOSOME_I:g.3213767_3214189del
  Sequence_details: SMap: S_parent: Sequence: Y54E10A
    Flanking_sequences: aattcgactataccacctttaaattgttta ttgatcaagactacggatacccgaaaggag
    Mapping_target: Y54E10A
    Source_location: 7 CHROMOSOME_I 3213766 3214190 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm4774_external
      tm4774_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 4774
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00001481
    Transcript: Y54E10A.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54E10A.4a.1:c.86-32_412del
        cDNA_position: ?-1066
        CDS_position: ?-412
        Protein_position: ?-138
        Intron_number: 6-7/10
        Exon_number: 7-8/11
      Y54E10A.4c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-247
        CDS_position: ?-247
        Protein_position: ?-83
        Intron_number: 1/3
        Exon_number: 1-2/4
      Y54E10A.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54E10A.4b.1:c.728-32_1054del
        cDNA_position: ?-1066
        CDS_position: ?-1054
        Protein_position: ?-352
        Intron_number: 6-7/9
        Exon_number: 7-8/10
      Y54E10A.4a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54E10A.4a.2:c.86-32_412del
        cDNA_position: ?-540
        CDS_position: ?-412
        Protein_position: ?-138
        Intron_number: 2-3/6
        Exon_number: 3-4/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 54176/54177-54599/54600 (423 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele