WormBase Tree Display for Variation: WBVar00273496
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| WBVar00273496 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00273496 | |||
| Other_name | uCE5-3011 | ||||
| Y43F8B.3b.1:c.3515-4del | |||||
| Y43F8B.3h.1:c.2599+364del | |||||
| Y43F8B.26:n.50del | |||||
| Y43F8B.3e.1:c.3190+364del | |||||
| Y43F8B.3g.1:c.4267+364del | |||||
| Y43F8B.3c.1:c.4018+364del | |||||
| Y43F8B.3d.1:c.4178-4del | |||||
| Y43F8B.3a.1:c.3355+364del | |||||
| Y43F8B.3f.1:c.3853+364del | |||||
| HGVSg | CHROMOSOME_V:g.19517272del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y43F8B | |
| Flanking_sequences | GTCACACTGGAAACCCATCGGATCAAAACTCGAGCTTCTGCTGCCCAAGGATCAATCGTGAGTTTACTGAGCCTCCAAAAACTCTGAGAATCGAAAATTT | CAGAGGATCCTTGCAATGCATTCGTCAGGAATGGAGAAGGCAACTTCAACATGACCAGGTACTACTACAATCCTGTGGAAGGCGACTGCTTCTCCTTCCA | |||
| Mapping_target | Y43F8B | ||||
| Type_of_mutation | Deletion | T | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| Analysis | SNP_Swan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00012814 | |||
| WBGene00200892 | |||||
| Transcript | Y43F8B.3b.1 | VEP_consequence | splice_region_variant,intron_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y43F8B.3b.1:c.3515-4del | ||||
| Intron_number | 15/19 | ||||
| Y43F8B.3g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.3g.1:c.4267+364del | ||||
| Intron_number | 17/18 | ||||
| Y43F8B.3e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.3e.1:c.3190+364del | ||||
| Intron_number | 14/15 | ||||
| Y43F8B.3h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.3h.1:c.2599+364del | ||||
| Intron_number | 14/16 | ||||
| Y43F8B.3d.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y43F8B.3d.1:c.4178-4del | ||||
| Intron_number | 18/21 | ||||
| Y43F8B.26 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.26:n.50del | ||||
| cDNA_position | 50 | ||||
| Exon_number | 1/1 | ||||
| Y43F8B.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.3a.1:c.3355+364del | ||||
| Intron_number | 15/17 | ||||
| Y43F8B.3c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.3c.1:c.4018+364del | ||||
| Intron_number | 18/20 | ||||
| Y43F8B.3f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.3f.1:c.3853+364del | ||||
| Intron_number | 17/19 | ||||
| Reference | WBPaper00005369 | ||||
| Method | SNP_Swan |
