WormBase Tree Display for Variation: WBVar00272058
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WBVar00272058 | Evidence | Paper_evidence | WBPaper00005369 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00272058 | |||
Other_name | uCE5-1398 | ||||
F26F12.3b.2:c.-116C>G | |||||
F26F12.3b.1:c.-116C>G | |||||
F26F12.3b.3:c.-116C>G | |||||
F26F12.3a.1:c.140C>G | |||||
F26F12.3c.1:c.-1511C>G | |||||
CE36538:p.Ala47Gly | |||||
HGVSg | CHROMOSOME_V:g.5844131G>C | ||||
Sequence_details | SMap | S_parent | Sequence | F26F12 | |
Flanking_sequences | CGAGGCGATGCCATCGTGGCTTTCCGAAGCGACGCGCTCCTTGCGCTTCTTTCCGAGCACGTGGTTCGGATCGTCGATGGTCTTGACGAGGAATGCGCCA | CCTTGGCGGCCTGGCGTGCATGGCGGTTGGCCACCGCGCTACGTCTGCCCTTCTCCTTCCTGCCCGTCAGTTTGCCACTCAATTCCGGGAATTCCGTTTC | |||
Mapping_target | F26F12 | ||||
Type_of_mutation | Substitution | G | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
Analysis | SNP_Swan | ||||
Status | Live | ||||
Affects | Gene | WBGene00017834 | |||
Transcript | F26F12.3b.1 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.1:c.-116C>G | ||||
cDNA_position | 265 | ||||
Exon_number | 2/7 | ||||
F26F12.3b.2 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.2:c.-116C>G | ||||
cDNA_position | 227 | ||||
Exon_number | 2/7 | ||||
F26F12.3a.1 (12) | |||||
F26F12.3c.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3c.1:c.-1511C>G | ||||
cDNA_position | 161 | ||||
Exon_number | 2/7 | ||||
F26F12.3b.3 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.3:c.-116C>G | ||||
cDNA_position | 109 | ||||
Exon_number | 1/6 | ||||
Reference | WBPaper00005369 | ||||
Method | SNP_Swan |