WormBase Tree Display for Variation: WBVar00271753
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| WBVar00271753 | Name | Public_name | WBVar00271753 | ||
|---|---|---|---|---|---|
| Other_name | uCE5-1061 | ||||
| haw164376 | |||||
| cewivar00229795 | |||||
| CE50266:p.Leu184= | |||||
| R08E5.1b.4:c.349C>T | |||||
| R08E5.1b.3:c.349C>T | |||||
| R08E5.1b.2:c.349C>T | |||||
| R08E5.1b.1:c.349C>T | |||||
| CE42393:p.Leu117= | |||||
| R08E5.1a.1:c.550C>T | |||||
| HGVSg | CHROMOSOME_V:g.3770679G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | R08E5 | |
| Flanking_sequences | CGAATGGCATCTTCTCCAATTTCTAGCCCGACAAAATGTGCTTTTGGGTATTGCTCGGCGAGCAACGAAGAATGGGATCCACCACCACACCCGACGTCCA | AACCCGCATTCCACCGGTTTCAAGCTTCTCGACAACTCCGTGACCGATGTCCGGAAGCATATCAGTTATCACATGCTTCTCGTGAAGTGCCTGACTCATT | |||
| Mapping_target | R08E5 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson4037 | ||||
| Analysis | SNP_Swan | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00584241 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00019961 | |||
| Transcript | R08E5.1a.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | R08E5.1a.1:c.550C>T | ||||
| HGVSp | CE50266:p.Leu184= | ||||
| cDNA_position | 571 | ||||
| CDS_position | 550 | ||||
| Protein_position | 184 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | Ctg/Ttg | ||||
| Amino_acid_change | L | ||||
| R08E5.1b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | R08E5.1b.1:c.349C>T | ||||
| HGVSp | CE42393:p.Leu117= | ||||
| cDNA_position | 571 | ||||
| CDS_position | 349 | ||||
| Protein_position | 117 | ||||
| Exon_number | 4/5 | ||||
| Codon_change | Ctg/Ttg | ||||
| Amino_acid_change | L | ||||
| R08E5.1b.3 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | R08E5.1b.3:c.349C>T | ||||
| HGVSp | CE42393:p.Leu117= | ||||
| cDNA_position | 607 | ||||
| CDS_position | 349 | ||||
| Protein_position | 117 | ||||
| Exon_number | 4/5 | ||||
| Codon_change | Ctg/Ttg | ||||
| Amino_acid_change | L | ||||
| R08E5.1b.2 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | R08E5.1b.2:c.349C>T | ||||
| HGVSp | CE42393:p.Leu117= | ||||
| cDNA_position | 779 | ||||
| CDS_position | 349 | ||||
| Protein_position | 117 | ||||
| Exon_number | 3/5 | ||||
| Codon_change | Ctg/Ttg | ||||
| Amino_acid_change | L | ||||
| R08E5.1b.4 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | R08E5.1b.4:c.349C>T | ||||
| HGVSp | CE42393:p.Leu117= | ||||
| cDNA_position | 537 | ||||
| CDS_position | 349 | ||||
| Protein_position | 117 | ||||
| Exon_number | 4/6 | ||||
| Codon_change | Ctg/Ttg | ||||
| Amino_acid_change | L | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00005369 | |||||
| Method | SNP_Swan |
